Problem during annotation
Closed this issue · 2 comments
cagescudero commented
Dear Ingo,
During the annotation of one dataset I got the following error:
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
problem 1!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
Problem occurred: 2!
problem 1!
problem 1!
problem 1!
problem 1!
problem 1!
Problem occurred: 2!
problem 1!
problem 1!
Problem occurred: 2!
Problem occurred: 2!
finished.
Deleting temporary output file...
--> annotation finished.
tool start: 23/02/2020 13:13:19:0
tool end : 24/02/2020 4:12:16:0
#####################
Any clues on what it means ?
Thanks!
Best,
Cata
trvinh commented
Hi @Cataescuderoo ,
that is error messages from the annotation of either PFAM or smart or both. Somehow the input IDs of your sequences did not match with the IDs in the PFAM/smart output.
How does the header of your Fasta sequences look like?
Best,
Vinh
P.S.: I am not Ingo, but I can take a look at the problem if you want :)
cagescudero commented
Hi @trvinh
I changed the headers and run the annotation again and now it works.
Thank you!