orthology

There are 22 repositories under orthology topic.

  • r2g

    yangwu91/r2g

    A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

    Language:Python48102

  • datasnakes/OrthoEvolution

    An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

    Language:Python294644
  • orthofisher

    JLSteenwyk/orthofisher

    a broadly applicable tool for automated gene identification and retrieval

    Language:Python28321

  • DessimozLab/FastOMA

    FastOMA is a scalable software package to infer orthology relationship.

    Language:Python253117
  • orthosnap

    JLSteenwyk/orthosnap

    a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

    Language:Python23481

  • laelbarlow/amoebae

    Workflow for identifying and classifying homologous gene/protein sequences

    Language:Python20212

  • drboothtj/getphylo

    a python package for automated generation of phylogenetic trees from genbank files

    Language:Python14220

  • BIONF/fDOG

    Feature-aware Directed OrtholoG search

    Language:Python95243

  • BIONF/HaMStR

    Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

    Language:Perl99202

  • SysBioChalmers/OrthOmics

    Collection of scripts for gene age sorting and multi-omics data mining and analysis

    Language:R8204
  • neurotransmissionevolution

    dalmolingroup/neurotransmissionevolution

    Research compendium for Viscardi et al, 2020.

    Language:TeX4202

  • geneontology/paint

    This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.

    Language:Java422554

  • PalMuc/triangulation

    Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

    Language:R4500

  • fethalen/phylopypruner

    Tree-based orthology inference with functionality for reducing contamination

    Language:Python3201

  • fethalen/orthoquoll

    A stand-alone tool for evaluating simple statistics of orthologs

    Language:Python1100

  • BIONF/dcc2

    Dynamic core orthologs compilation tool

    Language:Python0200

  • yangwu91/r2g.docker

    The Docker integration for the r2g project.

    Language:Dockerfile0200

  • bio2bel/entrez

    A Bio2BEL package for converting Entrez and HomoloGene to BEL

    Language:Python23

  • bio2bel/flybase

    A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)

    Language:Python23

  • bio2bel/mgi

    A Bio2BEL package for converting the Mouse Genome Informatics Database (MGI) to BEL

    Language:Python20

  • muffato/ensembl-download-java

    Java code to download genomes and orthologues from Ensembl

    Language:Java10

  • Riley-Grindle/orthology_map

    orthology_map is a pipeline designed to integrate suite of orthology assignment tools to contribute in a consensus based scoring algorithm

    Language:Roff