datasnakes/OrthoEvolution

Issues

• Travis CI Not Building

  #178 opened 2 years ago by sdhutchins
  0

• Transfer Manager, Cookie, and Tools into separate packages

  #163 opened 4 years ago by sdhutchins
  1

• Integrate Flask with Shiny.

  #34 opened 4 years ago by grabear
  2

• Refactor Phylogenetics

  #154 opened 5 years ago by sdhutchins
  2

• Documentation, etc.

  #153 opened 5 years ago by grabear
  2

• Qstat parsing will error on jobs that use characters that need to be escaped.

  #159 opened 5 years ago by grabear
  1

• Update Qstat for better use with JSON output

  #160 opened 5 years ago by grabear
  1

• Test or Rewrite Send2Server module

  #104 opened 4 years ago by sdhutchins
  4

• Add markdown for PyPi

  #135 opened 7 years ago by grabear
  1

• Finish Tools Module

  #83 opened 4 years ago by sdhutchins
  7

• Rework the SGE module.

  #148 opened 4 years ago by grabear
  9

• Implement better logging and notification.

  #134 opened 4 years ago by grabear
  2

• Database Management for the pipeline.

  #95 opened 4 years ago by grabear
  8

• AttributeError: 'DataFrame' object has no attribute 'ix'

  #164 opened 4 years ago by sdhutchins
  1

• Update readthedocs, wiki, and READMEs

  #111 opened 7 years ago by sdhutchins
  8

• Cookie module not functioning properly.

  #156 opened 5 years ago by grabear
  7

• Alignment Class

  #37 opened 7 years ago by grabear
  4

• Find a pipeline workflow package and integrate it

  #38 opened 5 years ago by sdhutchins
  8

• New/Alternative Blast Workflow

  #143 opened 5 years ago by grabear
  6

• Consider moving the Manager/config directory to a higher level parent.

  #150 opened 5 years ago by grabear
  0

• Attribute Configuration Error

  #149 opened 5 years ago by sdhutchins
  10

• Create an Icon or Image for the package.

  #133 opened 7 years ago by grabear
  10

• Create repository for external apps - Linux Admin Experience

  #89 opened 7 years ago by sdhutchins
  6

• Command Line Interface

  #80 opened 7 years ago by grabear
  6

• Weird importing issue.

  #84 opened 5 years ago by grabear
  6

• Integrate LogIt into package

  #88 opened 5 years ago by grabear
  12

• Re-address the current ways that the various Orthologs modules handle the data/databases.

  #106 opened 7 years ago by grabear
  1

• Using YAML tags and Python types with PyYAML.

  #118 opened 5 years ago by grabear
  2

• Add granular installation of various tools/toolsets.

  #139 opened 5 years ago by grabear
  2

• Convert StreamIEO class to LogIT class method.

  #114 opened 5 years ago by grabear
  2

• Re-Create the Digital Ocean Server.

  #39 opened 7 years ago by grabear
  2

• Change ProjMana.__init__()

  #36 opened 7 years ago by grabear
  6

• Figure out Perl to Python tags.

  #92 opened 7 years ago by grabear
  8

• Speeding up BLAST (Phasing out GI numbers)

  #113 opened 7 years ago by grabear
  4

• Create a Pull Request Template

  #85 opened 7 years ago by sdhutchins
  0

• Agree on a line length for our package.

  #102 opened 7 years ago by grabear
  8

• Deciding on DocString style

  #122 opened 7 years ago by sdhutchins
  5

• python 3.4 compatibility

  #59 opened 7 years ago by sdhutchins
  2

• Abstract the configuration code in the Orthologs submodules

  #75 opened 7 years ago by grabear
  6

• ETE3PAML - Clean and polish

  #35 opened 7 years ago by sdhutchins
  10

• Rename and refactor package

  #76 opened 7 years ago by sdhutchins
  18

• Documentation

  #77 opened 7 years ago by grabear
  2

• Combine data_management and the Luigi class

  #82 opened 7 years ago by grabear
  2

• Update Alignment configuration.

  #93 opened 7 years ago by grabear
  1

• GI deprecation

  #115 opened 7 years ago by grabear
  5

• Add better functionality to the Tier system used by the Accession file.

  #105 opened 7 years ago by grabear
  0

• new_basic_project Cookie for standalone projects.

  #74 opened 7 years ago by grabear
  3

• Abstract the functions that use cookiecutter. (Manager to Cookie)

  #79 opened 7 years ago by grabear
  1

• Remove `Archive` folder

  #66 opened 7 years ago by sdhutchins
  3

• Missing files

  #62 opened 7 years ago by grabear
  4