Datasnakes
Snaking through difficult Bioinformatics questions in order to provide reproducible results and reusable software.
United States of America
Pinned Repositories
awesome-reproducible-R
An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
beRi
beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
github-readme-templates
Easy to use README templates for a python project or python module
htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
python-hands-on-tutorial
A hands-on Python3 tutorial. 🐍
renv
Creating virtual environments for R.
rinse
A configurable installer CLI for installing R from source (sudo and non-sudo).
roxygen-tags
A comprehensive list of roxygen tags and their use cases. 🏷️
rut
A cli of r utilities aimed at package and .Rprofile management.
Datasnakes's Repositories
datasnakes/OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
datasnakes/renv
Creating virtual environments for R.
datasnakes/beRi
beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R
datasnakes/awesome-reproducible-R
An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
datasnakes/rinse
A configurable installer CLI for installing R from source (sudo and non-sudo).
datasnakes/github-readme-templates
Easy to use README templates for a python project or python module
datasnakes/htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
datasnakes/python-hands-on-tutorial
A hands-on Python3 tutorial. 🐍
datasnakes/roxygen-tags
A comprehensive list of roxygen tags and their use cases. 🏷️
datasnakes/rut
A cli of r utilities aimed at package and .Rprofile management.
datasnakes/cookiecutter-pypackage-travisci
A cookiecutter template for creating a python project & using travis ci for continuous integration.
datasnakes/beri-isc-proposal
An isc proposal to the R Consortium to elicit their support for beRi.
datasnakes/open-source-ideas
💡 Submit ideas for science-related projects or packages here. 💡
datasnakes/RNASeek
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
datasnakes/datasnakes.github.io
This is the website for the Datasnakes.
datasnakes/orthoevol-snakemake
A snakemake workflow for the OrthoEvol python package.
datasnakes/py3utils
Useful python utils for the everyday programmer.
datasnakes/pyDAVID
A python3 wrapper around the DAVID API
datasnakes/archives
:skull: Where everything goes to die. :skull:
datasnakes/explore
Community-curated topic pages on GitHub
datasnakes/get-beri
datasnakes/hackseq19docs
View team beRi's hackseq19 presentation. 📄
datasnakes/jetpack
A friendly package manager for R
datasnakes/pyVariant
A pipeline to call variants for RNASeq implemented with python.
datasnakes/semver.org
Semantic Versioning spec and website
datasnakes/shinyconfig
An R package that aids in the configuration and setup of shiny apps.
datasnakes/shinyLimma
datasnakes/snakemold
datasnakes/snakeutils
A collection of tools used by the Datasnakes in their various github projects.
datasnakes/up-for-grabs.net
Jump in!