sdhutchins
Graduate Student Trainee at UAB. Genetics, Genomics, & Bioinformatics. Current lab: @uab-cgds-worthey. Former lab: @vallenderlab.
@uab-cgds-worthey, @datasnakesBirmingham, AL
Pinned Repositories
biothings_client.py
This is a generic Python client for BioThings APIs
fasp-scripts
OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
grateful
Facilitate citation of R packages
edgePy
A Python implementation of edgeR for differential expression analysis
ChatGPT-Recipes
cookiecutter-computational-biology
A boilerplate for reproducible computational biology projects.
flask-demo
A mobile-responsive demo flask website that includes a login page.
labrat
A basic science lab framework aimed at reproducibility and lab management.
shinySCP
shinySCP is a shiny app built for fun to mimic existing SCP apps such as WinSCP or FileZilla.
sdhutchins's Repositories
sdhutchins/flask-demo
A mobile-responsive demo flask website that includes a login page.
sdhutchins/labrat
A basic science lab framework aimed at reproducibility and lab management.
sdhutchins/ChatGPT-Recipes
sdhutchins/nba-draft-combine-anthro
A project for creating a database of combine data and viewing that database/data in the browser.
sdhutchins/pwdgen
A command-line password generator.
sdhutchins/awesome-academic-websites
A curated list of personal academic websites and portfolios for researchers and scholars.
sdhutchins/ggpubr-tutorial
This is a tutorial that introduces ggpubr to graduate students.
sdhutchins/git-status-checker
Yet another git status checker, in python...
sdhutchins/ballr
Interactive NBA and NCAA Shot Charts with R and Shiny
sdhutchins/cheaha-notes
sdhutchins/cookiecutter-python-package
A simple cookiecutter python package that uses Travis CI and is pip installable.
sdhutchins/Grant_Guide
A repository for a generative AI tool to assist in grant writing, particularly NIH style grants
sdhutchins/grd-770
sdhutchins/myrandomutils
Some of my random python3 utility functions.
sdhutchins/OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
sdhutchins/phd-progress
A race against time...
sdhutchins/pkgmkr
Create an R package with one simple function.
sdhutchins/shauwiki
sdhutchins/shinyMyGene
sdhutchins/shinyPubMed
shinyPubMed allows users to search and visualize PubMed article abstracts based on specific search terms and a date range.
sdhutchins/ubrite-hackathon-2022
A template Hackathon website based on Biohackathon Europe 2022.
sdhutchins/victortools
An R package to mainipulate the output file from the Victor.
sdhutchins/workflowr
Organize your project into a research website
sdhutchins/workshop-cheatsheet
A template Latex file for creating a workshop cheatsheet covering Bash and Git.
sdhutchins/logzero
Robust and effective logging for Python 3.
sdhutchins/PhD-ChatGPT
How to use ChatGPT to help you in your scientific research.
sdhutchins/RENET2
RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
sdhutchins/sdhutchins
sdhutchins/swc-r-reproducible-scientific-analysis
A collection of materials used for teaching portions of the R for Reproducible Scientific Analysis course by The Carpentries.
sdhutchins/unofficial-gbs-wiki
This serves a guide for students entering the Graduate Biomedical Sciences (GBS) doctoral program at UAB.