BU-ISCIII/buisciii-tools

Issues

• Rename and documentation service catalog

  #4 opened 3 years ago by saramonzon
  4

• Service template improvements or fixes

  #143 opened a year ago by svarona
  0

• Add option to merge gene description (function) in DE

  #139 opened a year ago by svarona
  0

• Update the archive module

  #109 opened 2 years ago by GuilleGorines
  0

• Adding IIER services to the template list

  #114 opened 2 years ago by GuilleGorines
  0

• Improvements

  #131 opened 2 years ago by saramonzon
  0

• Include proper logging in all steps

  #64 opened 3 years ago by saramonzon
  0

• Cleaning module throws error when no samples linked to the service on iSkyLIMS

  #112 opened 2 years ago by GuilleGorines
  0

• Fix error when resolution id does not exits

  #104 opened 2 years ago by saramonzon
  1

• Add function for sorting in list module

  #59 opened 2 years ago by saramonzon
  1

• Sort path building in all modules

  #101 opened 2 years ago by saramonzon
  0

• Add bioinfo_doc mount path to config and modify bioinfo_doc module accordingly

  #72 opened 2 years ago by saramonzon
  1

• Update iskylims api upon requirements appear

  #8 opened 2 years ago by saramonzon
  5

• Create archive module

  #67 opened 2 years ago by saramonzon
  0

• Create finish module that does cleaning and copy to sftp

  #63 opened 2 years ago by saramonzon
  0

• Adding ARIBA to the template list

  #113 opened 2 years ago by GuilleGorines
  0

• Adding Seek and Destroy to template lists

  #116 opened 2 years ago by GuilleGorines
  0

• New service throwing error when no samples involved

  #110 opened 2 years ago by GuilleGorines
  0

• Change trimmomatic to fastp in snippy template

  #105 opened 2 years ago by saramonzon
  1

• Add pdf generation in bioinfo_doc module

  #65 opened 3 years ago by saramonzon
  1

• Develop purge_files method in clean module

  #68 opened 3 years ago by saramonzon
  0

• Create cleaning function that does it all

  #62 opened 3 years ago by saramonzon
  0

• Link cleaning module with main

  #60 opened 3 years ago by saramonzon
  0

• Create new service: design class and methods

  #3 opened 3 years ago by saramonzon
  1

• Create new service: define iskylims queries

  #2 opened 3 years ago by saramonzon
  2

• Deliver automatization

  #5 opened 3 years ago by saramonzon
  2

• Automatization service cleaning

  #6 opened 3 years ago by saramonzon
  3

• Create list service and version tools

  #7 opened 3 years ago by saramonzon
  3

• Implement main.py for calling each modules including logging

  #20 opened 3 years ago by saramonzon
  1

• Create template and json schema for assembly and annotation service

  #1 opened 3 years ago by saramonzon
  1

• Create github actions for python linting

  #10 opened 3 years ago by saramonzon
  1