Pinned Repositories
BU-ISCIII
Our Wiki and main public documentation repository.
buisciii-tools
set of helper tools for bu-isciii management of its core services portfolio.
iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
iSkyLIMS_wetlab
This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.
nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
plasmidID
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
SARS-Cov2_analysis
Documentation for analyzing SARS-Cov2 samples.
SARS_Cov2_consensus-nf
Nextflow pipeline to analyze SARS-Cov2 Illumina SISPA and/or amplicons data
taranis
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
BU-ISCIII's Repositories
BU-ISCIII/iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
BU-ISCIII/taranis
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
BU-ISCIII/iSkyLIMS_wetlab
This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.
BU-ISCIII/relecov-tools
set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.
BU-ISCIII/virology_training
This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.
BU-ISCIII/introduction_to_bioinformatics
In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.
BU-ISCIII/BU-ISCIII
Our Wiki and main public documentation repository.
BU-ISCIII/iSkyLIMS_drylab
BU-ISCIII/buisciii-tools
set of helper tools for bu-isciii management of its core services portfolio.
BU-ISCIII/iSkyLIMS_core
iSkyLIMS home website for information and links purposes
BU-ISCIII/markdowns
repository with the markdowns of all of our analyses.
BU-ISCIII/MPXstreveal
Monkepox STR reveal (MPXstreveal) a new draft approach for detecting and curating low complexity regions in monkeypox genomes using massive parallel sequencing.
BU-ISCIII/relecov-platform
BU-ISCIII/cna_bacterial_wgs_training
In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria
BU-ISCIII/galaxy_virologist_training
Galaxy training for virology profiles
BU-ISCIII/relecov_biohackaton
BU-ISCIII/relecov_qc_exercise
BU-ISCIII/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
BU-ISCIII/16S-Qiime-protocol
Pipeline del análisis comenzado el día 4 de mayo de 2021, tema: "bloqueadores"
BU-ISCIII/all_YML_files
Compilation of all the YAML files used in the unit (both for backup and sharing purposes)
BU-ISCIII/assemblybacterias
BU-ISCIII/bacterial_assembly-nf
Haploid bacterial assembly and automatic annotation implemented using Nextflow
BU-ISCIII/bu-hack-a-isciii
BU-ISCIII/buisciii.github.io
BU-ISCIII team website
BU-ISCIII/download_bigsdb_api
Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.
BU-ISCIII/eutils_search_cd44_paper
This repository contains a custom python script that finds citations that include the name of a gene along with a condition provided by the user. P.e brca2+AND+(MIGRATION)
BU-ISCIII/genebygenebact
Gene-by-gene outbreaks analysis pipeline using cgMLST schemas
BU-ISCIII/iSkyLIMS_clinic
BU-ISCIII/nexstrain_relecov
BU-ISCIII/PikaVirus