BU-ISCIII/viralrecon

Issues

• Changelog v2.3 viralrecon

  #15 opened 7 months ago by ErikaKvalem
  1

• Documentation on SARS service

  #17 opened 7 months ago by ErikaKvalem
  0

• Run latest service SARS

  #18 opened 7 months ago by ErikaKvalem
  0

• Analyse Pangolin versions and compare between laboratories vs viralrecon

  #22 opened 2 years ago by Alema91
  4

• Create summary report without multiqc

  #24 opened 2 years ago by Alema91
  1

• Parse assembly stats

  #25 opened 2 years ago by Alema91
  1

• Analyse fastq from first QC - Ion Torrent

  #21 opened 2 years ago by Alema91
  8

• Analyse fastq from first QC - Illumina and Nanopore

  #19 opened 2 years ago by Alema91
  5

• New functionality ivar: Create script for p-value strand bias for ivar

  #1 opened 3 years ago by saramonzon
  2

• Analizar las 3800 secuencias

  #23 opened 2 years ago by Alema91
  1

• Analyse consensus fasta to describe the variance of lineages with Pangolin versions

  #20 opened 3 years ago by Alema91
  4

• Create a issue in Ivar - mpileup

  #14 opened 3 years ago by Alema91
  4

• Results variant callers comparison

  #13 opened 3 years ago by Alema91
  5

• Create a issue in ivar - indels

  #16 opened 3 years ago by Alema91
  3

• Consensus comparison between bcftools, varscan and ivar consensus

  #6 opened 3 years ago by saramonzon
  3

• General stats comparison variants all and >80/75%

  #5 opened 3 years ago by saramonzon
  1

• Convert Rscript for long and wide table to python and add ivar and bcftools support

  #4 opened 3 years ago by saramonzon
  4

• New functionality ivar: fix annotation for complete codons variants

  #3 opened 3 years ago by saramonzon
  4

• Fix Bcftools masking reference name

  #12 opened 3 years ago by ErikaKvalem
  2

• Data output to ENA - GSAID format and specifics

  #7 opened 3 years ago by ErikaKvalem
  0

• Run 50 test samples with DSL2

  #2 opened 3 years ago by saramonzon
  0