Balharbi/GenomicDistributionsData

Data for GenomicDistributions R package

Due to GitHub file size restrictions the actual .rda files are not included in this repository. See "Installation" section for data building instructions

GenomicDistributionsData

R package that provides full data for GenomicDistributions package that provides functions for calculating and plotting the distribution of query features (e.g. genomic ranges) across the genome.

Installation

From remote tarball

Includes .rda data files in data/ subdirectory

install.packages("http://big.databio.org/GenomicDistributionsData/GenomicDistributionsData_0.0.1.tar.gz", repos=NULL)

Locally from this repository

Does not include .rda data files. These can be accessed using ExperimentHub or with named functions as detailed in the package vignette.

git clone https://github.com/databio/GenomicDistributionsData.git
cd GenomicDistributionsData
R CMD INSTALL .

Usage

library("GenomicDistributionsData")
TSS_hg38()

Alternatively:

hub = ExperimentHub()
TSShg38 = hub[["EH3477"]]