Balharbi
Aspire to be a lead researcher. learning modular thinking Interest: Research; mainly Genomics/Methylation/epigenetics/ Ph.D. Candidate at GMU
Virginia
Pinned Repositories
bgee_pipeline
Source code of the Bgee pipeline
BiSeq
dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
DSS
使用DSS计算差异，以及基因注释
genomation
R package for genomic feature analysis and visualization
methylation_scripts
All methylation file handling/processing scripts I ever made
methylkit-1
使用methylkit计算差异
recount3-docs
Documentation for all things related to `recount3`
ROC_plot
SomeRecords
Some very useful records for me.
Balharbi's Repositories
Balharbi/bgee_pipeline
Source code of the Bgee pipeline
Balharbi/dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Balharbi/genomation
R package for genomic feature analysis and visualization
Balharbi/methylation_scripts
All methylation file handling/processing scripts I ever made
Balharbi/recount3-docs
Documentation for all things related to `recount3`
Balharbi/SomeRecords
Some very useful records for me.
Balharbi/Alzheimers_DNAm
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Balharbi/bag-excel-scraper
An R script to download the BAG Excel file on COVID19, transform the data and bring it into the target data model. Quickly mashed together for @rob_salzer: https://twitter.com/rob_salzer/status/1245054668914470913
Balharbi/bioconda-utils
Utilities for building and managing bioconda recipes
Balharbi/bisulfite-seq-data-analysis-pipeline
This repo contains details of Bisulfite Processing Pipeline
Balharbi/book
Balharbi/ClusterProfShinyGSEA
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
Balharbi/data_reporting
Script for visualising and reporting data
Balharbi/DMRichR
An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Balharbi/epuRate
A clean R Markdown template for your reports
Balharbi/fluentGenomics
plyranges and tximeta case study
Balharbi/GenomicDistributionsData
Data for GenomicDistributions R package
Balharbi/jaffelab
R package with commonly used functions by the Jaffe lab
Balharbi/janitor
simple tools for data cleaning in R
Balharbi/labs
Rmd source files for the HarvardX series PH525x
Balharbi/Machine-Learning-with-Python
Practice and tutorial-style notebooks covering wide variety of machine learning techniques
Balharbi/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Balharbi/pacman
A package management tools for R
Balharbi/reghelper
R package with regression helper functions
Balharbi/rrbs-pipeline
A Snakemake pipeline for RRBS data analysis
Balharbi/splicejam
Sashimi plots for RNA-seq data using detected transcripts
Balharbi/swan_vis
A Python library to visualize and analyze long-read transcriptomes
Balharbi/systemPipeR
Project Website:
Balharbi/testdata
test.set
Balharbi/Till.i.Emerge.Modular
A collections of different biological for testing modules and