Becksteinlab/zarrtraj

Issues

• Minimal examples of R+W from disk in both H5MD and ZARR format.

  #42 opened 2 months ago by hmacdope
  1

• Clean up misc files for new release.

  #41 opened 2 months ago by hmacdope
  0

• Zarr 3.0 Wishlist

  #32 opened 3 months ago by ljwoods2
  1

• Remove kerchunk vendored patch and install directly from pip+git link

  #40 opened 2 months ago by hmacdope
  0

• Get docs up and running

  #39 opened 2 months ago by hmacdope
  0

• Fix CI

  #38 opened 2 months ago by hmacdope
  0

• Write new tests for H5MD format

  #33 opened 2 months ago by ljwoods2
  0

• Tests failing due to misuse of "rmdir"

  #26 opened 2 months ago by ljwoods2
  0

• Create zarr-only and zarr + dask benchmarks of trajectory reading

  #24 opened 3 months ago by ljwoods2
  0

• Filters inaccessible after array creation- unclear if they are being applied

  #22 opened 3 months ago by ljwoods2
  1

• reopen method possible not implemnted correctly

  #15 opened 3 months ago by ljwoods2
  0

• Formatting tests failing

  #13 opened 3 months ago by ljwoods2
  1

• Replace all writer buffer allocation with zarr.empty rather than zarr.zeros

  #12 opened 3 months ago by ljwoods2
  0

• Subselection in ZarrTrajWriter not implemented

  #10 opened 3 months ago by ljwoods2
  1

• ZarrTrajReader should fail when random access trajectory reading is performed

  #11 opened 3 months ago by ljwoods2
  1

• Change input from zarr.Group to fsspec string

  #18 opened 3 months ago by ljwoods2
  0

• windows tests timing out

  #31 opened 3 months ago by orbeckst
  0

• Benchmark zarrtraj's performance on disk

  #30 opened 3 months ago by ljwoods2
  0

• Write minimal tests to ensure google cloud and azure work with zarrtraj

  #29 opened 3 months ago by ljwoods2
  0

• Upload MDAnalysisTests data to a free S3 bucket

  #28 opened 3 months ago by ljwoods2
  0

• Update docs with fsspec URL integration

  #27 opened 3 months ago by ljwoods2
  0

• Implement random-access via an asynchronous reader

  #25 opened 3 months ago by ljwoods2
  0

• create initial release

  #19 opened 3 months ago by orbeckst
  0

• Writing observables in ZarrTrajWriter not implemented

  #9 opened 4 months ago by ljwoods2
  0

• More efficient buffering algorithms

  #14 opened 4 months ago by ljwoods2
  0

• Write an MDAnalysis reader for your proposed format

  #2 opened 4 months ago by hmacdope
  2

• Benchmark your MDAnalysis reader.

  #4 opened 4 months ago by hmacdope
  1

• Benchmark your format in its raw form

  #3 opened 4 months ago by hmacdope
  2

• Scope out structure of format with example notebook and document

  #1 opened 4 months ago by hmacdope
  2

• zarrtraj writer

  #5 opened 4 months ago by orbeckst
  0