Pinned Repositories
BenCaiello
Config files for my GitHub profile.
IMC_Denoise_integrated_to_steinbock
IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
MyFrozenFlowSOM
The complete FlowSOM package known from R, now available in Python! -- For my PALMETTOBUG project -- needs to eventually be on pip (whether by me in the last resort or by a compatible, official update by the saesys lab that places it on pip)
REDSEA_python_steinbock_Mesmer_masks
Python script for REDSEA with new Steinbock / DeepCell masks
simpledeepcell
This is a mini-package intended for publication on pip that contains directly copied code from deepcell-tf / deepcell-toolbox, but only the portions needed to run Mesmer, as required by steinbock.
navis
Python library for analysis of neuroanatomical data.
REDSEA
IMC_Denoise
IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
squidpy
Spatial Single Cell Analysis in Python
BenCaiello's Repositories
BenCaiello/IMC_Denoise_integrated_to_steinbock
IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications
BenCaiello/BenCaiello
Config files for my GitHub profile.
BenCaiello/MyFrozenFlowSOM
The complete FlowSOM package known from R, now available in Python! -- For my PALMETTOBUG project -- needs to eventually be on pip (whether by me in the last resort or by a compatible, official update by the saesys lab that places it on pip)
BenCaiello/REDSEA_python_steinbock_Mesmer_masks
Python script for REDSEA with new Steinbock / DeepCell masks
BenCaiello/simpledeepcell
This is a mini-package intended for publication on pip that contains directly copied code from deepcell-tf / deepcell-toolbox, but only the portions needed to run Mesmer, as required by steinbock.