navis-org/navis

Issues

• Version 2 Roadmap

  #153 opened a month ago by schlegelp
  7

• Issue with memory de-allocation

  #154 opened a month ago by schlegelp
  1

• navis.mesh() multiprocessing error

  #152 opened 2 months ago by lankiszhang
  3

• Feature request: support NWB format

  #151 opened 2 months ago by schlegelp
  0

• pykdtree requires OMP_NUM_THREADS flag on Linux

  #49 opened 3 years ago by schlegelp
  7

• Switch to pygfx?

  #138 opened 9 months ago by schlegelp
  1

• Switch documentation to mkdocs + mkdocs material

  #147 opened 6 months ago by schlegelp
  1

• caveclient > 5.15.2 crashes microns tutorial

  #146 opened 6 months ago by jakobtroidl
  1

• disallow Dotprops for `write_swc`

  #145 opened 7 months ago by schlegelp
  2

• split_axon_dendrite fails for big neurons

  #123 opened a year ago by katie-marquand
  2

• Parquet skeletons

  #134 opened 10 months ago by clbarnes
  4

• igraph usage

  #139 opened 9 months ago by clbarnes
  2

• Neurons from Navis neuPrint tutorial load but without connection tables (no n_connectors)

  #135 opened 9 months ago by Neurophila
  3

• New Feature for xform_brain: on-the-fly shortcuts for multi-transform chains

  #130 opened a year ago by schlegelp
  0

• downsample_neuron does not reassign connectors

  #122 opened a year ago by katie-marquand
  0

• Traversal model make new nodes which is not in edges

  #121 opened a year ago by LeeJinmook
  5

• Excitatory / Inhibitory information about synapses in neuprint

  #82 opened a year ago by jakobtroidl
  2

• The MiCrONS Datasets tutorial

  #75 opened a year ago by aquineuro
  11

• New numpy version leads to AttributeError

  #115 opened a year ago by jakobtroidl
  5

• Custom colored connectors in plot2d is broken

  #113 opened 2 years ago by pnewstein
  0

• Set DYLD_LIBRARY_PATH for elastix on MacOS

  #112 opened 2 years ago by jasper-tms
  2

• Thoughts on synblast

  #108 opened 2 years ago by clbarnes
  1

• Minor: documentation on navis.Volume

  #105 opened 2 years ago by mwinding
  1

• cut_skeleton memory issues

  #102 opened 2 years ago by dadanhan
  2

• Make nbl.smat.LookupNdBuilder more generic

  #97 opened 2 years ago by clbarnes
  2

• New system for ultrastructural features

  #95 opened 2 years ago by schlegelp
  0

• Make function signatures more consistent

  #94 opened 2 years ago by schlegelp
  0

• Bug changing connector size in navis.2d_plot()

  #93 opened 2 years ago by mwinding
  2

• New feature: split connectivity

  #92 opened 2 years ago by schlegelp
  3

• read_swc: strange behaviour when file path contains typo

  #91 opened 2 years ago by schlegelp
  2

• Advice for M1 mac installation

  #83 opened 3 years ago by swilson27
  8

• improve strahler_index

  #89 opened 2 years ago by schlegelp
  4

• Mapping TreeNeuron presynapses to postsynaptic bodyID

  #84 opened 3 years ago by jakobtroidl
  2

• Handle symlinked `transformix` executables

  #81 opened 3 years ago by jasper-tms
  1

• Error in navis.plot3d when radius = True

  #79 opened 3 years ago by kuanawanda
  3

• feature request: cable_overlap returns neuron or node_list

  #77 opened 3 years ago by kuanawanda
  2

• color skeleton branches by the strahler index in blender

  #76 opened 3 years ago by artxz
  2

• Blender Blobs from Neuromorpho

  #74 opened 3 years ago by psynaptix1
  3

• Neuromorpho neuron fetch

  #73 opened 3 years ago by psynaptix1
  1

• split_axon_dendrite not generating errors and just quiting

  #71 opened 3 years ago by dadanhan
  7

• Dotprops plotting: improve scale vector

  #52 opened 3 years ago by schlegelp
  2

• Add dashboard to explore NBLAST results

  #67 opened 3 years ago by schlegelp
  0

• Meaning of presynaptic and postsynaptic connectors

  #63 opened 3 years ago by dadanhan
  8

• blender integration macosX

  #62 opened 3 years ago by fcollman
  7

• plot_flat not an attribute of navis

  #61 opened 3 years ago by dadanhan
  2

• add clusters parameter for plotting

  #54 opened 3 years ago by schlegelp
  1

• Citing navis

  #55 opened 3 years ago by bdpedigo
  2

• Break navis into submodules

  #53 opened 3 years ago by schlegelp
  0

• upload_neuron sends wrong argument to navis.write_swc()

  #50 opened 3 years ago by kuanawanda
  3

• meshio for mesh I/O

  #51 opened 3 years ago by clbarnes
  3