neuroanatomy
There are 53 repositories under neuroanatomy topic.
dipy/dipy
DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
brainglobe/cellfinder
Automated 3D cell detection in very large images
brainglobe/brainreg
Automated 3D brain registration with support for multiple species and atlases.
ai-med/quickNAT_pytorch
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
navis-org/navis
Python library for analysis of neuroanatomical data.
natverse/nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
volBrain/AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
francopestilli/life
Please use the new version of LiFE: www.github.com/brain-life/encode
brainglobe/brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe/brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
natverse/nat.nblast
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
SWC-Advanced-Microscopy/BakingTray
Serial-section automated anatomy extension for ScanImage
YasPHP/BrainAR
A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.
obophenotype/brain_data_standards_ontologies
A repository for co-ordinating work on ontologies for the Brain Data Standards Project
SainsburyWellcomeCentre/neuro
Visualisation and analysis of brain imaging data
natverse/mouselightr
Bridge HHMI Janelia MouseLight Database and nat R Package
natverse/rcatmaid
R package providing API access to the CATMAID web image annotation tool
natverse/elmr
Support for working with light and electron microscopy fly brain data
yzx9/swcgeom
Neuron geometry library for swc format.
afids/afids-macaca
anatomical fiducials protocol adapted for macaques
HealthX-Lab/SONIA
Customizable system for displaying and inspecting brain structures, connections, and subsystems in VR
scil-vital/tractolearn
Tractography learning
dicemt/DTI-NODDI
:brain: DTI-NODDI: Create NODDI maps from DTI (either "FA and MD" or "L1, L2, and L3")
vadori/cytoark
Processing of histological data for cytoarchitecture analyses.
natverse/flycircuit
R package flycircuit
natverse/nat.templatebrains
Support for 3D template brains used as targets for image registration
tferr/ASA
Legacy project, now part of https://github.com/morphonets/SNT. Bitmap morphometry of neuronal arbors through Sholl
YasPHP/BrainEncyclopedia
A discord bot that acts as an encyclopedia about brain anatomy. Provides brain region lookup, image search, crowd science neuro research, and retrieves neuroscience libraries.
afids/afids-validator
Validator for the anatomical fiducial placement protocol
BonsaiNet/Staining-methods-and-morphologies
Staining Methods Bias Neuron Morphology
flyconnectome/fancr
Support Acccess to the Female Adult Nerve Cord (FANC) Dataset
jefferislab/LHlibrary
A R Shiny app for sharing and viewing lateral horn data
sergioluengosanchez/EMS_clustering
A directional-linear finite mixture model for clustering
tferr/hIPNAT
:microscope::deciduous_tree::computer: hIPNAT: Image Processing for NeuroAnatomy and Tree-like structures (Archived)