brainglobe/brainreg

Issues

• [BUG] Installation via metapackage doesn't come with appropriate libpng on Silicon Mac

  #205 opened 5 months ago by alessandrofelder
  5

• [BUG] Registration Warped Incorrectly with Princeton Mouse Brain Atlas

  #95 opened 2 months ago by samclothier
  3

• [BUG] "Check orientation" button in napari not consistent with registration results for hemisphere

  #200 opened 5 months ago by pderdeyn
  10

• Does Brainreg not work with images with are >2048 pixels in xy?

  #214 opened 3 months ago by Eddymorphling
  1

• Tests are failing with napari 0.5.0

  #211 opened 4 months ago by adamltyson
  1

• Registration fails in napari plugin if data is loaded with dask.

  #202 opened 5 months ago by adamltyson
  5

• [BUG] conda-forge installation doesn't come with brainglobe_atlasapi

  #206 opened 5 months ago by alessandrofelder
  12

• Use descriptive parameter names rather than variable names in the napari plugin

  #194 opened 6 months ago by adamltyson
  0

• Add option in the GUI to keep some CPU cores free

  #150 opened 6 months ago by adamltyson
  0

• [BUG] The GUI does not allow negative values in key parameter boxes

  #192 opened 6 months ago by AdrianAriasAbreu
  1

• Convert to qtpy

  #190 opened 7 months ago by adamltyson
  0

• [FEATURE] Refactor `LoadFileException` into `brainglobe-utils`

  #180 opened 8 months ago by willGraham01
  3

• [BUG] brainreg-napari rescale fails when stack opened using "Open files as stack"

  #184 opened 8 months ago by alessandrofelder
  1

• [BUG] Doublecheck additional channels don't overwrite each other

  #183 opened 8 months ago by alessandrofelder
  3

• [BUG] Installation via napari installer fails

  #165 opened 10 months ago by alessandrofelder
  2

• [Napari HUB cli] Metadata enhancement

  #155 opened 10 months ago by stephenlenzi
  1

• [BUG] cannot install the lastest version from napari GUI

  #171 opened 10 months ago by jingjie-li
  7

• Add napari trove classifier and ensure brainreg is visible on the napari hub, and installable through the napari GUI

  #167 opened a year ago by adamltyson
  2

• [BUG] tox fails on Python 3.11 and `ubuntu-latest`

  #163 opened a year ago by alessandrofelder
  0

• Check orientation button crashes napari with big data as it tries to view it in 3D

  #164 opened a year ago by adamltyson
  0

• Seperate CLI and API into submodules

  #139 opened a year ago by adamltyson
  0

• Remove niftyreg binaries from package

  #116 opened a year ago by dstansby
  5

• Look into removing need to process files on disk

  #105 opened a year ago by adamltyson
  0

• [Feature] Brainreg accept N images, using the first for registration, rather than -a --additional flags

  #92 opened a year ago by JoeZiminski
  1

• [Feature] Make it easier to use an existing registration to transform a new channel

  #88 opened a year ago by raacampbell
  8

• [Feature] Provide better error messages

  #82 opened a year ago by adamltyson
  1

• Add support for macOS

  #77 opened a year ago by adamltyson
  3

• Add test run with conda installation of `niftyreg`

  #74 opened a year ago by dstansby
  1

• registration failing when their are non-tiff files in the directory

  #154 opened a year ago by stephenlenzi
  2

• Investigate use of multi-resolution formats.

  #151 opened a year ago by adamltyson
  0

• Consider using voxel sizes to re-scale loaded image after registration.

  #152 opened a year ago by adamltyson
  0

• Address pandas FutureWarning

  #141 opened a year ago by adamltyson
  0

• registration accuracy

  #138 opened a year ago by neal1130
  1

• Handle input with wrong dimensions more gracefully

  #128 opened a year ago by alessandrofelder
  1

• Provide some info to users if NiftyReg segfaults

  #120 opened a year ago by adamltyson
  3

• Update versioning (still hard coded in init)

  #123 opened a year ago by adamltyson
  0

• [BUG] Pre-processing skip only affects floating image

  #118 opened a year ago by jkenney9a
  2

• [BUG] ERROR: Cannot install brainreg==0.0.2 ....

  #78 opened 2 years ago by Hanbing1999
  4

• NanoZoomer and brainreg

  #114 opened 2 years ago by aeazraoui
  1

• [Feature] Add `brainreg` to conda-forge

  #106 opened 2 years ago by dstansby
  2

• Documentation install optional uses '.[dev]' syntax, but windows syntax is .[dev]

  #98 opened 2 years ago by JoeZiminski
  2

• [BUG] Using the `-d` flag gives wrongly formatted output filenames.

  #83 opened 2 years ago by adamltyson
  2

• The `--downsample` / `-d` flag is poorly named.

  #84 opened 2 years ago by adamltyson
  1

• pip install brainreg fails on M2 processor (macOS Monterey)

  #90 opened 2 years ago by JoeZiminski
  2

• [BUG] pandas deprecation warning

  #81 opened 2 years ago by dstansby
  1

• Remove duplication in the tests

  #87 opened 2 years ago by adamltyson
  1

• [Feature] Document the single hemisphere functionality.

  #86 opened 2 years ago by adamltyson
  1

• [BUG] ValueError: zero-size array to reduction operation maximum which has no identity

  #80 opened 2 years ago by Hanbing1999
  3

• [BUG] "Library not loaded: /usr/local/opt/libpng/lib/libpng16.16.dylib" when using 'test_brain' to test brainreg

  #79 opened 2 years ago by Hanbing1999
  2

• registered brain is shrunk compared to brain

  #71 opened 2 years ago by agriffa0201
  3