Pinned Repositories
injectionmapping
Analysis and visualisation of injection sites segmented in neuro
magicgui-demo
Demonstrating how to easily create GUIs using magicgui
napari-tutorials
tutorials for the napari image viewer
opendirection
Analysis of open field extracellular recordings
brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainrender
A Python package to visualise neuroanatomical data in atlas space
cellfinder
Automated 3D cell detection in very large images
movement
Python tools for analysing body movements across space and time
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
adamltyson's Repositories
adamltyson/magicgui-demo
Demonstrating how to easily create GUIs using magicgui
adamltyson/brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
adamltyson/imlib
General data processing functions
adamltyson/abba_python
ABBA, controlled from python
adamltyson/movement
Python tools for analysing body movements across space and time
adamltyson/adamltyson
adamltyson/bg-atlasgen
adamltyson/BiaPy-doc
BiaPy's project documentation
adamltyson/brainglobe-atlasapi-feedstock
A conda-smithy repository for brainglobe-atlasapi.
adamltyson/brainglobe-napari-io-feedstock
A conda-smithy repository for brainglobe-napari-io.
adamltyson/brainglobe-segmentation-feedstock
A conda-smithy repository for brainglobe-segmentation.
adamltyson/brainglobe-utils-feedstock
A conda-smithy repository for brainglobe-utils.
adamltyson/brainglobe.github.io
brainglobe.info website
adamltyson/brainreg-feedstock
A conda-smithy repository for brainreg.
adamltyson/cellfinder-core-feedstock
A conda-smithy repository for cellfinder-core.
adamltyson/contributors-test
adamltyson/fancylog-feedstock
A conda-smithy repository for fancylog.
adamltyson/NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex models
adamltyson/neuroscience-landscape
Neuroscience Landscape
adamltyson/npe2api
adamltyson/org_stats
Scripts to report statistics about a GitHub organisation
adamltyson/pyclub-typing
adamltyson/pyNeuroTrace
Python code for processing neural timeseries
adamltyson/python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
adamltyson/python-tooling
adamltyson/RatInABox
A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.
adamltyson/usrse.github.io
US RSE umbrella web page
adamltyson/vedo
A python module for scientific analysis of 3D data based on VTK and Numpy
adamltyson/WAZP
Wasp Animal-tracking Zoo project with Pose estimation
adamltyson/zapit-Python-Bridge
Bridge for controlling zapit via Python