Pinned Repositories
course-swc-timeseries-analysis-2023
datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
ethology
Data processing tools for animal behavioural analysis
fancylog
Fancier logging with python.
HowTo
NIU website on common software problems and their troubleshooting
movement
A Python toolbox for analysing animal body movements across space and time
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
spikewrap
A package to manage electrophysiology analysis.
swc-hpc-pose-estimation
Pose estimation scripts to be run on the SWC HPC cluster
SWC/GCNU Neuroinformatics Unit's Repositories
neuroinformatics-unit/movement
A Python toolbox for analysing animal body movements across space and time
neuroinformatics-unit/python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
neuroinformatics-unit/datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
neuroinformatics-unit/spikewrap
A package to manage electrophysiology analysis.
neuroinformatics-unit/NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
neuroinformatics-unit/ethology
Data processing tools for animal behavioural analysis
neuroinformatics-unit/fancylog
Fancier logging with python.
neuroinformatics-unit/actions
Re-usable GitHub Action scripts
neuroinformatics-unit/HowTo
NIU website on common software problems and their troubleshooting
neuroinformatics-unit/neuroinformatics-unit.github.io
Home website of the Neuroinformatics Unit
neuroinformatics-unit/gsoc
A repository for our participation in Google Summer of Code
neuroinformatics-unit/rsp-vision
Analysis and visualization of calcium imaging data from retrosplenial cortex
neuroinformatics-unit/derotation
Derotate images acquired via 2-photon or 3-photon calcium imaging
neuroinformatics-unit/scripts
Small but useful scripts to share
neuroinformatics-unit/slurmio
Python tools to read SLURM job parameters.
neuroinformatics-unit/software-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
neuroinformatics-unit/swc-slack
Tools to interface with slack
neuroinformatics-unit/.github
neuroinformatics-unit/course-extracellular-ephys-analysis
Covering how to build electrophysiology pipelines with SpikeInterface
neuroinformatics-unit/course-behavioural-analysis
Materials and slides for the video-based analysis of animal behaviour course.
neuroinformatics-unit/qt-niu
Reusable Qt elements
neuroinformatics-unit/photon-mosaic
Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices
neuroinformatics-unit/translocator-models
Evaluate the model for the translocator project
neuroinformatics-unit/dashboard
Overview of all Neuroinformatics Unit repos
neuroinformatics-unit/extracellular_ephys_dev
A repository for formalising and testing extracellular ephys pipelines
neuroinformatics-unit/slides-NIU-tea-hour
Slides for the internal SWC tea hour
neuroinformatics-unit/neuropixels_platform_paper
Code used to generate figures for Siegle, Jia et al. (2019)
neuroinformatics-unit/poisson-numcodecs
Numcodecs implementation of photon conversion using poisson statistics
neuroinformatics-unit/slides-qbatch-template-building
Slides for NIU meeting about parallelising template building (and possibly other things)
neuroinformatics-unit/suite2p
cell detection in calcium imaging recordings