Pinned Repositories
actions
Re-usable GitHub Action scripts
course-swc-timeseries-analysis-2023
datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
fancylog
Fancier logging with python.
movement
Python tools for analysing body movements across space and time
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
quarto-presentation-template
spikewrap
A tool to streamline extracellular electrophysiology analysis using SpikeInterface
swc-hpc-pose-estimation
Pose estimation scripts to be run on the SWC HPC cluster
SWC/GCNU Neuroinformatics Unit's Repositories
neuroinformatics-unit/movement
Python tools for analysing body movements across space and time
neuroinformatics-unit/python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
neuroinformatics-unit/NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
neuroinformatics-unit/datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
neuroinformatics-unit/spikewrap
A tool to streamline extracellular electrophysiology analysis using SpikeInterface
neuroinformatics-unit/fancylog
Fancier logging with python.
neuroinformatics-unit/actions
Re-usable GitHub Action scripts
neuroinformatics-unit/HowTo
NIU website on common software problems and their troubleshooting
neuroinformatics-unit/rsp-vision
Analysis and visualization of calcium imaging data from retrosplenial cortex
neuroinformatics-unit/course-software-good-practice
Slides for NIU collaborative coding and software development good practices
neuroinformatics-unit/derotation
Derotate images acquired via 2-photon or 3-photon calcium imaging
neuroinformatics-unit/neuroinformatics-unit.github.io
Home website of the Neuroinformatics Unit
neuroinformatics-unit/slurmio
Python tools to read SLURM job parameters.
neuroinformatics-unit/software-skills
Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
neuroinformatics-unit/swc-slack
Tools to interface with slack
neuroinformatics-unit/.github
neuroinformatics-unit/course-data-management-neuroblueprint
Toy examples highlighting good data management practices
neuroinformatics-unit/software-practice-template
A template to generate repositories used to teach SE best practices
neuroinformatics-unit/course-behaviour-hpc
neuroinformatics-unit/course-extracellular-ephys-analysis
Covering how to build electrophysiology pipelines with SpikeInterface
neuroinformatics-unit/course-behavioural-analysis
Materials and slides for the video-based analysis of animal behaviour course.
neuroinformatics-unit/In2Research-2024
Repository used as a playground for the In2Research placement we hosted in summer 2024.
neuroinformatics-unit/course-intro-python
neuroinformatics-unit/dashboard
Overview of all Neuroinformatics Unit repos
neuroinformatics-unit/nuffield-students-exercises
A series of python exercises to make the students practice before starting the main project
neuroinformatics-unit/org-metrics-dashboard
Overview of all NIU repos
neuroinformatics-unit/slides-demo-cellfinder-multiprocessing
neuroinformatics-unit/slides-SWC-PhD-intro
Slides introducing the software skills courses on the SWC/GCNU PhD course
neuroinformatics-unit/translocator-models
Evaluate the model for the translocator project
neuroinformatics-unit/calcium-imaging-automation
Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices