Pinned Repositories
actions
Re-usable GitHub Action scripts
course-swc-timeseries-analysis-2023
datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
fancylog
Fancier logging with python.
movement
Python tools for analysing body movements across space and time
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
quarto-presentation-template
spikewrap
A tool to streamline extracellular electrophysiology analysis using SpikeInterface
swc-hpc-pose-estimation
Pose estimation scripts to be run on the SWC HPC cluster
SWC/GCNU Neuroinformatics Unit's Repositories
neuroinformatics-unit/software-practice-template
A template to generate repositories used to teach SE best practices
neuroinformatics-unit/In2Research-2024
Repository used as a playground for the In2Research placement we hosted in summer 2024.
neuroinformatics-unit/course-intro-python
neuroinformatics-unit/nuffield-students-exercises
A series of python exercises to make the students practice before starting the main project
neuroinformatics-unit/slides-neuroinformatics-unit-OCNS-INCF
Slides for talk at the INCF/OCNS Software working group on 2024-07-09
neuroinformatics-unit/scripts
Small but useful scripts to share
neuroinformatics-unit/slides-ui-ux
neuroinformatics-unit/show-in-file-manager
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
neuroinformatics-unit/DataSquash
Data compression utilities for systems neuroscience.
neuroinformatics-unit/slides-neuroinformatics-unit-usrse
neuroinformatics-unit/slides-templates-atlases
On brain templates & atlases, and how to build them.
neuroinformatics-unit/quarto-presentation-template
neuroinformatics-unit/ood_presentation
Updates on Open OnDemand
neuroinformatics-unit/slides-behavioural-projects-overview
Slides giving an overview of NIU's behavioural analysis projects.
neuroinformatics-unit/swc-hpc-pose-estimation
Pose estimation scripts to be run on the SWC HPC cluster
neuroinformatics-unit/bc_example_jupyter
Batch Connect - Example Jupyter Notebook Server
neuroinformatics-unit/slurm-demo
neuroinformatics-unit/ood-dash-plotly-app
Wrapper around a dash-plotly app to render it via Open OnDemand
neuroinformatics-unit/dashboard_for_neuroinformatics-unit
neuroinformatics-unit/brainglobe-architecture-plans
A presentation describing thoughts, plans, and decisions for BrainGlobe's architecture
neuroinformatics-unit/Jupyter_OOD
Batch Connect - OSC Jupyter Notebook Server
neuroinformatics-unit/image-analysis-python
Materials for the SWC course on Image Analysis in Python
neuroinformatics-unit/sphinx-website-template
Your template for any sphinx website NIU branded
neuroinformatics-unit/course-swc-timeseries-analysis-2023
neuroinformatics-unit/textual-slurm-script-generator
neuroinformatics-unit/neuroinformatics-sphinx-theme
A clean, three-column Sphinx theme with Bootstrap for the PyData community
neuroinformatics-unit/runningmouse
Analysis of probe and camera recordings of mice running on treadmills