Pinned Repositories
injectionmapping
Analysis and visualisation of injection sites segmented in neuro
magicgui-demo
Demonstrating how to easily create GUIs using magicgui
napari-tutorials
tutorials for the napari image viewer
opendirection
Analysis of open field extracellular recordings
brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainrender
A Python package to visualise neuroanatomical data in atlas space
cellfinder
Automated 3D cell detection in very large images
movement
Python tools for analysing body movements across space and time
python-cookiecutter
Utility to create a basic Python project structure with tests, CI etc.
adamltyson's Repositories
adamltyson/CalciumAnalysis
Analysis of calcium dynamics in 2D images.
adamltyson/cell-coloc-3D
Measure distribution of a marker per cell in a manually segmented object
adamltyson/FIJI_ICR
Assorted FIJI macros and scripts
adamltyson/shapeSize
Stimulus presentation using Psychtoolbox
adamltyson/foci-colocalisation
Measure colocalisation of two types of foci per cell.
adamltyson/foci-timelapse
Measure foci dynamics
adamltyson/foci2D
Measure foci per cell in 2D images (e.g. proximity ligation assay)
adamltyson/gitignore
A collection of useful .gitignore templates
adamltyson/lasagna
3-D imaging visualisation through slicing
adamltyson/man-seg-analysis
Analyses objects following manual segmentation (e.g. EM)
adamltyson/MATLAB_tools
adamltyson/relativeTrack
Track one class of objects relative to another.
adamltyson/shell-misc
adamltyson/spatialRL
Modelling of spatial navigation using reinforcement learning.