Pinned Repositories
abfload
matlab fuction for reading abf files including v2.0 files
Alignment_Projects
Aligner for large scale serial section image data
MMSalesforceGsuite
Repository for Minds Matter Seattle Salesforce Gsuite Integration code
MosaicPlannerLive
MosaicPlanner is a python based GUI program for acquiring array tomography data using MicroManager as an interface.
neuronex2019
repo for neuronex workshop
PyChunkedGraph
Chunked graph structure used for human proof-reading in Python
render-deploy
repo for docker-compose deployment of render stack
render-python-apps
vtkplotter
A python class for scientific visualization of 3D objects with VTK
fcollman's Repositories
fcollman/abfload
matlab fuction for reading abf files including v2.0 files
fcollman/render-deploy
repo for docker-compose deployment of render stack
fcollman/MMSalesforceGsuite
Repository for Minds Matter Seattle Salesforce Gsuite Integration code
fcollman/neuronex2019
repo for neuronex workshop
fcollman/vtkplotter
A python class for scientific visualization of 3D objects with VTK
fcollman/AllenSDK
code for reading and processing Allen Institute for Brain Science data
fcollman/CAVEpipelines
instructions for creating chunkedgraph, initial meshing, l2cache etc
fcollman/charts
Helm Charts
fcollman/chunkflow
Compose chunk operators to create pipeline for distributed computation
fcollman/cloud-volume
A client for reading and writing Neuroglancer Precomputed volumes on cloud services.
fcollman/dash-connectivity-viewer
fcollman/DracoPy
Python wrapper for Google's Draco mesh compression library
fcollman/EMBinder
a test of producing a binder with access to minnie data
fcollman/kubernetes-ingress-controller
Kong for Kubernetes
fcollman/microns-nda-access
Provides instructions and Docker configurations for accessing the microns_phase3_nda schema and/or an isolated database container.
fcollman/microns_phase3_nda
nda schema for MICrONS phase3
fcollman/MicronsBudapest
A repo for sharing notebooks for the microns workshop
fcollman/navis
Python library for analysis of neuroanatomical data.
fcollman/neuroglancer
WebGL-based viewer for volumetric data
fcollman/PCG_Reagglomerate
A repo to perform python based graph agglomeration procedure for connectomics, designed to work with the PyChunkedGraph.
fcollman/pcg_skeleton_api
web server for calculating and serving skeletons
fcollman/PCGL2Cache
Level 2 caching system for the PyChunkedGraph
fcollman/ProofreadingProgress
fcollman/python-task-queue
Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.
fcollman/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
fcollman/scipy
Scipy library main repository
fcollman/sphinxtutorial
a tutorial repo for learning to use sphinx for python documentation
fcollman/SWC2Blender
A simple SWC-file importer for Blender. This addon for Blender allows you to import files from e.g. neuromorpho.org.
fcollman/SWDB_2019
Repository for course materials for the Summer Workshop on the Dynamic Brain 2019
fcollman/SWDB_2019-1
Repository for course materials for the Summer Workshop on the Dynamic Brain 2019