Pinned Repositories
abfload
matlab fuction for reading abf files including v2.0 files
Alignment_Projects
Aligner for large scale serial section image data
MMSalesforceGsuite
Repository for Minds Matter Seattle Salesforce Gsuite Integration code
MosaicPlannerLive
MosaicPlanner is a python based GUI program for acquiring array tomography data using MicroManager as an interface.
neuronex2019
repo for neuronex workshop
PyChunkedGraph
Chunked graph structure used for human proof-reading in Python
render-deploy
repo for docker-compose deployment of render stack
render-python-apps
vtkplotter
A python class for scientific visualization of 3D objects with VTK
fcollman's Repositories
fcollman/MosaicPlannerLive
MosaicPlanner is a python based GUI program for acquiring array tomography data using MicroManager as an interface.
fcollman/render-python-apps
fcollman/PyChunkedGraph
Chunked graph structure used for human proof-reading in Python
fcollman/Alignment_Projects
Aligner for large scale serial section image data
fcollman/czifile
czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
fcollman/diced-docker
a repository demonstrating diced running in docker
fcollman/dl-docker
An all-in-one Docker image for deep learning. Contains all the popular DL frameworks (TensorFlow, Theano, Torch, Caffe, etc.)
fcollman/DynamicAnnotationDB
fcollman/EM_aligner_python
Python version of Khaled Khairy's EM_aligner, supporting distributed assembly and solve
fcollman/euclidean-distance-transform-3d
Multi-Label 3D Anisotropic Euclidean Distance Transform (MLAEDT-3D). Useful for dense biomedical image segmentations.
fcollman/gamer
Geometry-preserving Adaptive Mesh Generator
fcollman/gitignore
A collection of useful .gitignore templates
fcollman/igneous
Python pipeline for Neuroglancer compatible Downsampling, Mesh, Remapping, and more. Originally by Nacho and Will.
fcollman/LabelOps
Operates on labeled neuronal meshes.
fcollman/marshmallow-jsonschema
JSON Schema Draft v4 (http://json-schema.org/) formatting with marshmallow
fcollman/micro-manager
Microscope control and image acquisition integrated with ImageJ.
fcollman/NadekoBot
Open source, general-purpose Discord chat bot written in C#
fcollman/neuroglancer-tools
Collection of python tools for neuroglancer and ndviz integration
fcollman/nshack17
Neurostorm Hackathon (2017 @ MBL)
fcollman/OASIS
Deconvolution of calcium imaging data
fcollman/python-o365
A simple python library for interaction with Office 365.
fcollman/pytorch_fnet
Implementation of fluoresence prediction tool
fcollman/readthedocs.org
source code to readthedocs.org
fcollman/render
Render transformed image tiles
fcollman/render-flask
a web-app for visualizing a render service
fcollman/requests
Python HTTP Requests for Humans™ ✨🍰✨
fcollman/SmartThingsPublic
SmartThings open-source DeviceTypeHandlers and SmartApps code
fcollman/sphinx
Main repository for the Sphinx documentation builder
fcollman/swdb_2017_tools
A collaborative Python package built by participants of the Summer Workshop on the Dynamic Brain
fcollman/vizrelay
Simple flask app to link render status pages to visualization.