Pinned Repositories
connectomes
[WIP] Unified interface to various backends used for hosting connectomes in the cloud.
fafbseg-py
Tools to work with the FlyWire connectome. Fully interoperable with navis.
fastcore
[WIP] Fast core functions for navis re-implemented in Cython.
navis
Python library for analysis of neuroanatomical data.
navis-flybrains
Transforms for navis that enable mapping between different Drosophila template brains.
navis-pipelines
Run navis pipelines described by YAML files.
neuropython2024
Documentation and Material for the 2024 NeuroPython Workshop
pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
skeletor
Extraction of 3D skeletons from meshes.
sparse-cubes
Marching cubes for sparse matrices
NAVis's Repositories
navis-org/skeletor
Extraction of 3D skeletons from meshes.
navis-org/navis
Python library for analysis of neuroanatomical data.
navis-org/pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
navis-org/fafbseg-py
Tools to work with the FlyWire connectome. Fully interoperable with navis.
navis-org/navis-flybrains
Transforms for navis that enable mapping between different Drosophila template brains.
navis-org/connectomes
[WIP] Unified interface to various backends used for hosting connectomes in the cloud.
navis-org/sparse-cubes
Marching cubes for sparse matrices
navis-org/.github
navis-org/fastcore
[WIP] Fast core functions for navis re-implemented in Cython.
navis-org/navis-nblast-gpu
NBLAST running on the GPU using PyTorch [WIP]
navis-org/navis-pipelines
Run navis pipelines described by YAML files.
navis-org/neuropython2024
Documentation and Material for the 2024 NeuroPython Workshop
navis-org/navis-nblast-large
Implementation of NBLAST for large datasets
navis-org/navis-nsim
Interface between navis and the NEURON simulator
navis-org/navis-mousebrains
Template brains and transforms for mouse brains
navis-org/octarine-navis-plugin
Octarine plugin to visualize navis objects
navis-org/pymaid_template
A starter kit for people using python-catmaid for neuronal analysis