schlegelp

postdoc working on neurons, circuits and connectomes; 🐘 @uni_matrix@qoto.org

University of CambridgeUniversity of Cambridge

Pinned Repositories

fafbseg-py
Tools to work with the FlyWire connectome. Fully interoperable with navis.
Language:Python13 4 155
fastcore
[WIP] Fast core functions for navis re-implemented in Cython.
Language:Jupyter Notebook1 3 42
navis
Python library for analysis of neuroanatomical data.
Language:Python84 7 9333
navis-flybrains
Transforms for navis that enable mapping between different Drosophila template brains.
Language:Jupyter Notebook8 1 102
skeletor
Extraction of 3D skeletons from meshes.
Language:Python215 3 5126
bioRxiv-LaTeX-template
LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
Language:TeX21 4 13
catheat
Plot categorical heatmaps with seaborn
Language:Python18 3 57
CATMAID-to-Blender
Plugin for Blender to interface with CATMAID Server and Pull Data
Language:Python8 6 1613
octarine
A fast, lightweight 3D viewer for Python based on WGPU
Language:Python45 2 51
tanglegram
Plot tanglegrams from two dendrograms
Language:Python20 5 155

schlegelp's Repositories

schlegelp/octarine
A fast, lightweight 3D viewer for Python based on WGPU
Language:Python45 2 51
schlegelp/tanglegram
Plot tanglegrams from two dendrograms
Language:Python20 5 155
schlegelp/catheat
Plot categorical heatmaps with seaborn
Language:Python18 3 57
schlegelp/CATMAID-to-Blender
Plugin for Blender to interface with CATMAID Server and Pull Data
Language:Python8 6 1613
schlegelp/brainmappy
Python tools to interact with Google brainmaps API
Language:Python5 4 00
schlegelp/nglscenes
Generate and manipulate neuroglancer scenes
Language:Python5 3 3
schlegelp/sea-serpent
A dataframe-like wrapper around the seatable API.
Language:Python4 3 1
schlegelp/xform
A package to transform spatial data from one space to another.
Language:Python2 4 51
schlegelp/aann
All nearest-neighbor search using Delaunay graphs
Language:Jupyter Notebook1 2 2
schlegelp/fastcore-rs
Reimplementation of navis functions in Rust.
Language:Rust1 3 4
schlegelp/fitbit-python
A Python library to query your Fitbit data.
1 4 0
schlegelp/BridgingRegistrations
Bridging registrations to convert between different Drosophila template brains
schlegelp/CAJAL
A Python package using Gromov-Wasserstein distance to compare cell shapes
Language:Python0 0
schlegelp/clio-py
Python client for clio-store
Language:Python2 01
schlegelp/cloudblender
Blender wrapper for cloud-volume
Language:Python2 1
schlegelp/connectomics-vis-survey.github.io
Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics
Language:JavaScript2 0
schlegelp/distframe
A DataFrame-like wrapper around condensed distance matrices.
Language:Python2 0
schlegelp/EMAnnotationSchemas
Repository to hold schemas for annotations of volumetric imaging data focused on EM
Language:Python1 0
schlegelp/flysim
Easy leaky integrate & fire models of the fly brain
schlegelp/jupytext
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
Language:Python2 0
schlegelp/mlx-nn
Brute force nearest-neighbour lookup for Apple silicon
Language:Python2 1
schlegelp/nat.hdf5
Playground for reading neuron data from HDF into nat
Language:R4 1
schlegelp/nblast-knn
Playground for tinkering with improving KNN for NBLAST
Language:Jupyter Notebook3 0
schlegelp/neuprint-python
Python client utilties for interacting with the neuPrint connectome analysis service
Language:Python2 0
schlegelp/neuroglancer
WebGL-based viewer for volumetric data
Language:TypeScript3 0
schlegelp/pygfx
A python render engine running on wgpu.
Language:Python1 0
schlegelp/pynrrd
Simple pure-python module for reading and writing nrrd files.
Language:Python0 0
schlegelp/python_template
Cookie cutter template for Python projects
Language:Python
schlegelp/shull
S-Hull Delaunay triangulation implemented in Rust (with Python bindings)
Language:Rust2 0
schlegelp/vispy
Main repository for Vispy
Language:Python3 0