Pinned Repositories
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
eulerscraper
A script to scrape projecteuler.net's problems
f_it
Functional Iterator for python
jeiss-convert
Convert Jeiss .dat files to HDF5
molesq
Moving Least Squares algorithm for python
nblast-rs
ncollpyde
Mesh containment and line segment intersection queries in Python (over rust)
zarr3-rs
Prototype implementation of zarr v3 in rust
navis
Python library for analysis of neuroanatomical data.
pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
clbarnes's Repositories
clbarnes/zarr3-rs
Prototype implementation of zarr v3 in rust
clbarnes/molesq
Moving Least Squares algorithm for python
clbarnes/ncollpyde
Mesh containment and line segment intersection queries in Python (over rust)
clbarnes/nblast-rs
clbarnes/backports.strenum
Base class for creating enumerated constants that are also subclasses of `str`
clbarnes/multiscale_read
Read xarray.DataArrays from multiscale datasets with various metadata standards
clbarnes/navis
Python 3 library for Neuron Analysis and Visualization
clbarnes/neurarrow
Specification for neuroscience data in arrow/ parquet format
clbarnes/acardona_scripts
A collection of scripts related to neural circuit analysis and image processing for python, Fiji, TrakEM2, CATMAID, and others.
clbarnes/adel-rs
Rust implementation of ascii-delimited files (showing love to FS, GS, RS, US control codes)
clbarnes/arrow-rs
Official Rust implementation of Apache Arrow
clbarnes/bdv_meta
Python script for adding BigDataViewer downscaling metadata to N5 containers
clbarnes/cremi_python
Python scripts to read and write the CREMI hdf5 file format.
clbarnes/extreqs
Parse python requirements.txt files into setuptools extras
clbarnes/fortuna-academy-thaumaturgy-enchantment
Fate-based magic school RPG
clbarnes/funlib.segment
Tools to segment graphs and volumes
clbarnes/jotdown
A Djot parser library
clbarnes/jsoncanvas
Rust implementation of JSON Canvas
clbarnes/jsoncanvas-jd
clbarnes/kiddo
Kiddo
clbarnes/nabo-rs
A pure Rust implementation of the fast K Nearest Neighbor (KNN) library for low-dimensional spaces.
clbarnes/ncollide-issue-graze
clbarnes/poetry-template
Copier template for a python project using poetry
clbarnes/pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
clbarnes/rhodo
Yet another tree library in rust, focusing on informative node indices
clbarnes/simples
A rust library for smoothing and simplification of N-dimensional linestrings
clbarnes/Spond
clbarnes/swc-neuron
Rust crate and small CLI tool for interacting with SWC neuronal morphology files
clbarnes/syn_area_label
Python package for extracting bigCAT data from CATMAID for synaptic cleft measurements
clbarnes/timethin
Utility for deleting files based on datetimes in the filename