Pinned Repositories
academic-kickstart
code for https://www.benjasanchez.com/
AMICI
Advanced Multilanguage Interface to CVODES and IDAS
carveme
CarveMe: genome-scale metabolic model reconstruction
ciTest
map-runs
map runs into a single HTML world map
notebooks
jupyter notebooks for poking and prodding
better-cb
A compendium of tools for (better) computational biology.
caffeine-vue
Caffeine frontend, a state-of-the-art web platform which puts model-guided and data-driven design into practice in industrial biotechnology.
GECKO
Toolbox for including enzyme constraints on a genome-scale model.
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
BenjaSanchez's Repositories
BenjaSanchez/map-runs
map runs into a single HTML world map
BenjaSanchez/academic-kickstart
code for https://www.benjasanchez.com/
BenjaSanchez/AMICI
Advanced Multilanguage Interface to CVODES and IDAS
BenjaSanchez/carveme
CarveMe: genome-scale metabolic model reconstruction
BenjaSanchez/ciTest
BenjaSanchez/notebooks
jupyter notebooks for poking and prodding
BenjaSanchez/cmaputil
BenjaSanchez/cobrapy
COBRApy is a package for constraint-based modeling of biological networks
BenjaSanchez/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
BenjaSanchez/COPASI
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
BenjaSanchez/forking-workflow-exercise
Exercise to practice collaborative forking workflow.
BenjaSanchez/GECKO
Toolbox for including enzyme constraints on a genome-scale model.
BenjaSanchez/goatools
Python scripts to find enrichment of GO terms
BenjaSanchez/gofowlme
just cuz
BenjaSanchez/heme_production_ecYeastGEM
BenjaSanchez/ide-examples
Examples to demonstrate the usage of IDE.
BenjaSanchez/mixed-bag
Documentation, misc. notes, wild scripts, etc. Mostly for future-self.
BenjaSanchez/PESTO
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
BenjaSanchez/RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
BenjaSanchez/recipe
best guacamole ever
BenjaSanchez/reproducible-research-init
Research project initialization and organization following reproducible research guidelines
BenjaSanchez/SysBioRaffle
Raffle app for selecting people in the @SysBioChalmers group
BenjaSanchez/test-repo
this is a test
BenjaSanchez/testingCi
BenjaSanchez/to-dos
Default repo for Zenhub board
BenjaSanchez/yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
BenjaSanchez/yeastdummy
BenjaSanchez/yeastdummy2
BenjaSanchez/yeastdummy3
BenjaSanchez/yeastdummy4