Pinned Repositories
alkesgrp_sumstats_2024
antibiotic_viz_for_steph
banovich_cm_ipsc_enrichment_anlaysis
ipsc_cardiomyocyte_differentiation
rare_disease_preprocess_pipeline
SPOT
SPlicing Outlier deTection
surge
TGFM_workflow
unsupervised_s_ldsc
Unsupervised stratified LD-score-regression
Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
BennyStrobes's Repositories
BennyStrobes/Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
BennyStrobes/surge
BennyStrobes/SPOT
SPlicing Outlier deTection
BennyStrobes/TGFM_workflow
BennyStrobes/ipsc_cardiomyocyte_differentiation
BennyStrobes/unsupervised_s_ldsc
Unsupervised stratified LD-score-regression
BennyStrobes/alkesgrp_sumstats_2024
BennyStrobes/antibiotic_viz_for_steph
BennyStrobes/eb_surge
Run surge on EB data
BennyStrobes/eqtl_factorization
BennyStrobes/eqtl_informed_prs
BennyStrobes/eqtl_polygenicity-
Exploratory analysis of polygenicities of regulation of gene expression
BennyStrobes/fine_mapping_with_out_of_sample_ld
BennyStrobes/folded_binomial_regression
Run regression where errors are distributed as folded binomial distribution
BennyStrobes/gene_heritability
BennyStrobes/gtex_v8
BennyStrobes/gtex_v8_rare_variant_figure_generation
Scripts to generate all main and supplementary figures in "Diverse transcriptomic signatures across human tissues identify functional rare genetic variation"
BennyStrobes/gwas_and_eqtl_specificity
BennyStrobes/ipsc_preprocess_pipeline
BennyStrobes/leafcutter_sqtl_viz
Visualize leafcutter cluster distributions stratified by genotype
BennyStrobes/marginalized_rss_h2_estimation
Compute h2 and stratified h2 using beta-marginalized RSS likelihood
BennyStrobes/non_linear_sldsc
Non-linear implementation of sldsc
BennyStrobes/qtl_factorization
Factorize qtl effect sizes over samples
BennyStrobes/qtl_mediated_h2
BennyStrobes/rare_disease_hopkins
Pipeline to run RNA-seq based rare variant prioritization methods on rare disease samples from Hopkins.
BennyStrobes/sugar_omics
analysis of protein and other omic sequencing data in response to various metabolism treatments
BennyStrobes/sv_heritability
BennyStrobes/unbiased_expression_mediated_h2_estimation
BennyStrobes/variance_outlier_analysis
Call Variance Outliers using single-cell rna-seq data
BennyStrobes/variant_stratefied_expression_h2