Pinned Repositories
alkesgrp_sumstats_2024
antibiotic_viz_for_steph
ipsc_cardiomyocyte_differentiation
rare_disease_preprocess_pipeline
SPOT
SPlicing Outlier deTection
surge
TGFM
Tissue-Gene Fine-Mapping
TGFM_workflow
unsupervised_s_ldsc
Unsupervised stratified LD-score-regression
Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
BennyStrobes's Repositories
BennyStrobes/rare_disease_preprocess_pipeline
BennyStrobes/banovich_cm_ipsc_enrichment_anlaysis
BennyStrobes/dynamic_qtl_pipelines
EAGLE-based models to identify dynamic qtls in ipsc data.
BennyStrobes/edward_experiments
BennyStrobes/eqtl_factorization_vi
BennyStrobes/expression_slope_dynamic_qtl_pipelines
Run dynamic qtl analysis using 1 sample per cell line. Where the covariate of interest is genotype and the continuous output variable is slope of the linear model on expression across time in that cell line
BennyStrobes/fast_meta_tissue
BennyStrobes/gaussian_dynamic_qtl_pipeline
BennyStrobes/gtex_v8_linc_rna
BennyStrobes/gtex_v8_rare_splice
BennyStrobes/icm_project2
BennyStrobes/ipsc_eqtl_results
eQTL results from iPSC-cardiomyocyte differentiation project
BennyStrobes/ipsc_hypoxia_response
Identify dynamic qtls in ipsc hypoxia data set
BennyStrobes/ipsc_qtl_pipelines
BennyStrobes/ipsc_time_step_independent_wasp_pipeline
BennyStrobes/linear_mixed_model_vi
Fit linear mixed model for overlapping samples with variational inference
BennyStrobes/machine_counter
BennyStrobes/manual_logistic_regression
BennyStrobes/process_banovich_qtls
BennyStrobes/process_rv_data
BennyStrobes/river_models_for_emily
BennyStrobes/temporal_qtl_enrichment_analysis
Perform downstream/enrichment analysis on temporal qtl analyses