BioGeek
Senior BioAI software engineer at @instadeepai – Machine Learning for protein design and personalized cancer vaccines.
@instadeepaiCape Town, South Africa
Pinned Repositories
50-examples
Contains the text of a book describing interesting examples of Python programming for use in teaching. An alternate title was "The Python Teaching Cookbook".
adventofcode
My solutions of Advent Of Code in Python
aima
Python implementation of algorithms from Russell and Norvig's Artificial Intelligence: A Modern Approach.
BioGeek
biogeek.github.io
Personal website https://jeroen.vangoey.be
BioinformaticsAlgorithms1
Python solutions for the Coursera course Bioinformatics Algorithms (Part 1)
euler
My solutions to Project Euler
magic
Scanner for decks of cards with bar codes printed on card edges
pymzML
pymzML - an interface between Python and mzML Mass spectrometry Files
InstaNovo
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
BioGeek's Repositories
BioGeek/adventofcode
My solutions of Advent Of Code in Python
BioGeek/SchaakStudieSpinsels2
BioGeek/bioclip
Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs
BioGeek/bioconda-recipes
Conda recipes for the bioconda channel.
BioGeek/biodiffusion
A list of manuscripts/tools using diffusion on biological enttieis
BioGeek/camtrap-dp
Camera Trap Data Package (Camtrap DP)
BioGeek/chalk
A declarative drawing API in Python
BioGeek/codebase
FAST iteration of MARL research ideas: A starting point for Multi-Agent Reinforcement Learning
BioGeek/datasets
🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools
BioGeek/datasette
An open source multi-tool for exploring and publishing data
BioGeek/dift
Emergent Correspondence from Image Diffusion
BioGeek/fastapi-react-todo
BioGeek/FrameDiPT
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
BioGeek/InstaNovo
BioGeek/langchain
⚡ Building applications with LLMs through composability ⚡
BioGeek/marl-eval
A tool for aggregating and plotting MARL experiment data.
BioGeek/maxtext
A simple, performant and scalable Jax LLM!
BioGeek/mkdocs-deploy-gh-pages
GitHub Action to deploy an MkDocs site to GitHub Pages
BioGeek/ml-engineering
Machine Learning Engineering Guides and Tools
BioGeek/nucleotide-transformer
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
BioGeek/og-marl
Datasets with baselines for offline multi-agent reinforcement learning :robot:
BioGeek/pytorch_geometric
Graph Neural Network Library for PyTorch
BioGeek/qd-skill-discovery-benchmark
Neuroevolution is a Competitive Alternative to Reinforcement Learning for Skill Discovery
BioGeek/QDax
Accelerated Quality-Diversity
BioGeek/s2-folks
Public space for the user community of Semantic Scholar APIs to share scripts, report issues, and make suggestions.
BioGeek/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
BioGeek/streamlit-fastapi-langchain
BioGeek/template-fastapi-react
A solution template for creating a Single Page App (SPA) with React and FastAPI following the principles of Clean Architecture.
BioGeek/transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
BioGeek/udlbook
Understanding Deep Learning - Simon J.D. Prince