BioGeek
Staff Research engineer at @instadeepai – Machine Learning for personalized cancer vaccines, de novo peptide sequencing and signal peptides.
@instadeepaiCape Town, South Africa
Pinned Repositories
50-examples
Contains the text of a book describing interesting examples of Python programming for use in teaching. An alternate title was "The Python Teaching Cookbook".
adventofcode
My solutions of Advent Of Code in Python
aima
Python implementation of algorithms from Russell and Norvig's Artificial Intelligence: A Modern Approach.
euler
My solutions to Project Euler
hackathon_indaba_senegal_2024
hackathon_indabaX_2024
Data and starter notebooks for the locust breeding ground prediction hackaton
magic
Scanner for decks of cards with bar codes printed on card edges
Mava
A library of multi-agent reinforcement learning components and systems
pymzML
pymzML - an interface between Python and mzML Mass spectrometry Files
InstaNovo
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
BioGeek's Repositories
BioGeek/BioGeek
BioGeek/fairness-indicators
Tensorflow's Fairness Evaluation and Visualization Toolkit
BioGeek/annotated_deep_learning_paper_implementations
🧑🏫 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit), optimizers (adam, radam, adabelief), gans(dcgan, cyclegan, stylegan2), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, etc. 🧠
BioGeek/astropicam
Raspberry Pi Telescope Camera with web interface
BioGeek/biobert_embedding
Token and Sentence level embeddings from BioBERT model
BioGeek/bioicons
A library of free open source icons for science illustrations in biology and chemistry
BioGeek/BraillePy
BioGeek/codevember-2021
BioGeek/conan
Conan - The open-source C/C++ package manager
BioGeek/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
BioGeek/covid
Comparison of Dash and Streamlit using a simple Covid-19 app
BioGeek/datasources
Repository with the BridgeDb data source.
BioGeek/dxf-cheddar
Generate dxf for rectangle with evenly spaced holes (circles or slots)
BioGeek/fc
BioGeek/gu-who
answering: who are all these users in my GitHub org?
BioGeek/home
The personal website/portfolio template by Hashir Shoaib. Built using React and Bootstrap.
BioGeek/LegoMicroscope
To learn about optics and microscopy, we generated a simple to build lego microscope that does not need precision optics and 3D printed parts.
BioGeek/NansAreNumbers
An esoteric data type built entirely of NaNs.
BioGeek/opentrees-data
Generate vector tiles from open data for opentrees.org
BioGeek/p5js-shaders
Using shaders in p5.js
BioGeek/pachyderm
Reproducible Data Science at Scale!
BioGeek/palmerpenguins
Easily load the Palmer Penguins dataset in python
BioGeek/pywikipathways
Python Client Package for WikiPathways
BioGeek/reprodl2021
Host repository for the "Reproducible Deep Learning" PhD course
BioGeek/slicefinder
automatic data slicing
BioGeek/spirit
Atomistic Spin Simulation Framework
BioGeek/tfjs-models
Pretrained models for TensorFlow.js
BioGeek/the-fair-cookbook
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
BioGeek/treex
A Pytree Module system for Deep Learning in JAX
BioGeek/woutervangoey.github.io