FASTA module not defined
dinesh110598 opened this issue · 1 comments
dinesh110598 commented
I'm a new user trying to use the FASTA module from here to read a file. Followed the docs but it seems the module may not be exported properly in v3.0.2.
(@v1.7) pkg> st
Status `~/.julia/environments/v1.7/Project.toml`
[7e6ae17a] BioSequences v3.0.2
[052768ef] CUDA v3.10.1
[91a5bcdd] Plots v1.31.2
[c3e4b0f8] Pluto v0.19.9
julia> using BioSequences
julia> r = FASTA.Reader(
open("/home/dinesh/Downloads/seq.fa", "r"))
ERROR: UndefVarError: FASTA not defined
Stacktrace:
[1] top-level scope
@ REPL[10]:1
julia> r = BioSequences.FASTA.Reader(
open("/home/dinesh/Downloads/seq.fa", "r"))
ERROR: UndefVarError: FASTA not defined
Stacktrace:
[1] getproperty(x::Module, f::Symbol)
@ Base ./Base.jl:35
[2] top-level scope
@ REPL[11]:1
jakobnissen commented
FASTA is a module of a different package - FASTX. You'd need to use that separately.