Pinned Repositories
appliedgenomics2021
Materials for Spring 2021 Applied Genomics Course
bangui_bunyavirus
Data and R code used in Orf et al. (2023) "Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans." https://doi.org/10.1093/ve/vead018
covseq
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
DGE_workshop
exonerate_active_pseudo
exonerate_for_transposon_annotation
mgescan
A Galaxy based system for identifying retrotransposons in genome
Monkeypox-genome-assembly
Genome assembly pipelines for next- and thrid-generation sequencing datasets
paper-zhang2014
Skyline-plots
Inference of past population dynamics using Bayesian Coalescent Skyline and Birth-Death Skyline plots.
BioWu's Repositories
BioWu/mgescan
A Galaxy based system for identifying retrotransposons in genome
BioWu/Monkeypox-genome-assembly
Genome assembly pipelines for next- and thrid-generation sequencing datasets
BioWu/paper-zhang2014
BioWu/Skyline-plots
Inference of past population dynamics using Bayesian Coalescent Skyline and Birth-Death Skyline plots.
BioWu/appliedgenomics2021
Materials for Spring 2021 Applied Genomics Course
BioWu/bangui_bunyavirus
Data and R code used in Orf et al. (2023) "Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans." https://doi.org/10.1093/ve/vead018
BioWu/covseq
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
BioWu/DGE_workshop
BioWu/exonerate_active_pseudo
BioWu/exonerate_for_transposon_annotation
BioWu/fieldbioinformatics
The ARTIC field bioinformatics pipeline
BioWu/jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
BioWu/mscaffolder
A comparative genome scaffolding tool
BioWu/Freyja
Depth-weighted De-Mixing
BioWu/mpox-dynamics
BioWu/pangoLEARN
Store of the trained model for pangolin to access.
BioWu/pingpongpro
Find ping-pong signatures in piRNA-Seq data like a pro
BioWu/poreCov
SARS-CoV-2 workflow for nanopore sequence data
BioWu/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
BioWu/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
BioWu/SARS-CoV-2
SARs-CoV-2 Primer schemes
BioWu/Streptococcus_suis
Principal components analysis of SNPs of Streptococcus suis
BioWu/traitmodels-wme
Tutorials for working with trees in R
BioWu/transposons
Drosophila transposable element consensus sequences
BioWu/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
BioWu/variationtoolkit
Automatically exported from code.google.com/p/variationtoolkit