Bioprotocols/labop

Issues

• Demo miniprep protocol?

  #147 opened 3 years ago by photocyte
  4

• README.md: Installation description - labop/labop-check is not available anymore

  #210 opened a year ago by markdoerr
  0

• Naming of Primitives

  #176 opened 2 years ago by mszulcz-mitre
  7

• Undocumented dependency on IPython

  #202 opened a year ago by jakebeal
  0

• labop is not available on PyPi

  #201 opened a year ago by jakebeal
  0

• Handling and/or propagation of uncertainties

  #178 opened 2 years ago by photocyte
  5

• Link ContainerSpec to SampleCollections

  #198 opened 2 years ago by bbartley
  3

• Serialization to HTML & .docx?

  #197 opened 2 years ago by photocyte
  2

• Demo serial dilution to final protein assay standard curve protocol?

  #196 opened 2 years ago by photocyte
  0

• Round trip WYSIWG LabOP editor, LLMs, Microsoft Word

  #195 opened 2 years ago by photocyte
  1

• Associating measurement data and sample descriptions

  #183 opened 2 years ago by jakebeal
  14

• Should `SampleCollection` be used to represent a single sample?

  #115 opened 2 years ago by bbartley
  1

• bioprotocols.org http vs https URLs

  #167 opened 2 years ago by photocyte
  4

• Refactoring PAML naming to LabOP

  #162 opened 2 years ago by photocyte
  5

• Opentrons: how to handle Transfer volumes that exceed the maximum volume of a pipette?

  #177 opened 2 years ago by bbartley
  3

• Documentation about the Python API?

  #175 opened 2 years ago by mszulcz-mitre
  1

• Cannot compute values of unlinked Output Pins

  #166 opened 2 years ago by bbartley
  1

• Protocols to Support

  #169 opened 2 years ago by danbryce
  0

• Automatically add inputs for a CallBehaviorAction to the Document

  #157 opened 2 years ago by bbartley
  0

• Catch unlinked output pins

  #163 opened 2 years ago by bbartley
  0

• Unbound Parameters and ParameterValues not determined correctly

  #165 opened 2 years ago by bbartley
  0

• Verify inputs to an action have been added to the Document

  #128 opened 2 years ago by bbartley
  1

• PAML name collisions

  #107 opened 2 years ago by photocyte
  33

• Activate "Discussions" tab on this repo?

  #159 opened 2 years ago by photocyte
  1

• HTML Specialization in addition to Markdown?

  #158 opened 2 years ago by photocyte
  2

• Key errors due to missing token values

  #152 opened 2 years ago by bbartley
  0

• Generate output objects of execution edges

  #125 opened 2 years ago by bbartley
  0

• Support Parameters with unbounded cardinality

  #127 opened 2 years ago by bbartley
  1

• Newlines in N-triples serializations are breaking tests based on file comparison

  #150 opened 2 years ago by bbartley
  0

• Save CI test files as artifacts

  #151 opened 2 years ago by bbartley
  0

• PAML landing page?

  #143 opened 3 years ago by photocyte
  6

• Culture Primitive: Include Orbital radius?

  #142 opened 3 years ago by photocyte
  1

• Use Python class objects rather than raw URIs as arguments

  #146 opened 3 years ago by bbartley
  2

• Use a Single Python Code Documentation Style

  #141 opened 3 years ago by cannin
  4

• PAML suggestion: calculation of time / energy cost for a given protocol.

  #144 opened 3 years ago by photocyte
  2

• ValueError: inferring DataArray dimensions from dictionary like ``coords`` is no longer supported. Use an explicit list of ``dims`` instead.

  #138 opened 3 years ago by bbartley
  0

• Turtle should be compatible with tyto

  #135 opened 3 years ago by bbartley
  2

• Cryptic failures when a required parameter is not specified for an action

  #132 opened 3 years ago by bbartley
  0

• Is it necessary to import the ENTIRE OM-2 ontology?

  #129 opened 3 years ago by rpgoldman
  0

• uml.LiteralReal has no attribute 'value'

  #126 opened 3 years ago by bbartley
  0

• Should enabled_activity_node raise an exception when required inputs are missing?

  #120 opened 3 years ago by bbartley
  3

• Check multiple Python versions?

  #121 opened 3 years ago by rpgoldman
  1

• Checking for required input Parameters fails

  #119 opened 3 years ago by bbartley
  0

• Markdown export of demo notebook has incorrect(?) output

  #117 opened 3 years ago by noahsprent
  4

• Readme installation instructions give error as Git clone does not automatically fetch submodules

  #116 opened 3 years ago by noahsprent
  2

• Representation of array data

  #113 opened 3 years ago by jakebeal
  18

• [request] Documentation for markdown execution engine

  #110 opened 3 years ago by tsdobbs
  1

• Indicate required vs optional Parameters for a Primitive

  #114 opened 3 years ago by bbartley
  0

• Add support for NCBI,NCIT,SBO, and SO Ontologies

  #109 opened 3 years ago by palibhasataolamang
  4

• LaTeX and UML figure generation is broken

  #106 opened 3 years ago by bbartley
  0