The Blue Brain Project
Open Source Software produced and used by the Blue Brain Project
Geneva, Switzerland
Pinned Repositories
BioExplorer
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
BluePyOpt
Blue Brain Python Optimisation Library
Brayns
Visualizer for large-scale and interactive ray-tracing of neurons
CoreNeuron
Simulator optimized for large scale neural network simulations.
eFEL
Electrophys Feature Extraction Library
HighFive
HighFive - Header-only C++ HDF5 interface
NeuroM
Neuronal Morphology Analysis Tool
NeuroMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
nexus
Blue Brain Nexus - A knowledge graph for data-driven science
nmodl
Code Generation Framework For NEURON MODeling Language
The Blue Brain Project's Repositories
BlueBrain/HighFive
HighFive - Header-only C++ HDF5 interface
BlueBrain/nexus
Blue Brain Nexus - A knowledge graph for data-driven science
BlueBrain/nmodl
Code Generation Framework For NEURON MODeling Language
BlueBrain/nexus-forge
Building and Using Knowledge Graphs made easy
BlueBrain/nexus-web
Nexus Web is the interface of Blue Brain Nexus
BlueBrain/neurodamus
A BBP Simulation Control application for NEURON
BlueBrain/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
BlueBrain/neuroagent
LLM agent made to communicate with different neuroscience related tools
BlueBrain/atlas-densities
Tools to compute densities in the context of brain atlases.
BlueBrain/core-web-app
Open Brain Platform
BlueBrain/morphology-suite
BlueBrain/BlueRecording
Creates weights files for extracellular recording in neurodamus
BlueBrain/cortexetl
BlueBrain/platform-docs
BlueBrain/spacktainers
Automated container building via AWS Codebuild, based on Spack
BlueBrain/appositionizer
Detect physical locations for synapses
BlueBrain/axon-synthesis
A package to synthesize artificial axons
BlueBrain/bbp-atlas-pipeline
Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.
BlueBrain/functionalizer
Create a functional connectome from physical connections between cells
BlueBrain/nmodl-references
nmodl references
BlueBrain/open-data-registry
A registry of publicly available datasets on AWS
BlueBrain/aws-parallel-cluster
BlueBrain/ccfv3a-extended-atlas
BlueBrain/Molsys-MetabolicModel
BlueBrain/Molsys-transcriptomic-atlas
This repository provides code to generate a transcriptomic atlas and its mapping to TME types.
BlueBrain/neurodamus-sonata-template
BlueBrain/region-grower
Neuronal synthesis in atlas-based regions
BlueBrain/sbo-qa-automation
BlueBrain/synthdb
BlueBrain/synthesis-workflow
Luigi workflow for neuronal synthesis