Pinned Repositories
3d-dna
3D de novo assembly (3D DNA) pipeline
AGWG-merge
biobambam
Tools for bam file processing
Bioinformatics-with-Python-Cookbook-Second-Edition
Bioinformatics with Python Cookbook Second Edition, published by Packt
caffe-model
Caffe models (imagenet pretrain) and prototxt generator scripts for inception_v3 \ inception_v4 \ inception_resnet \ fractalnet \ resnext
caffe-project-VggNet-ResNet-DenseNet
Chlamydomonas_comparative_genomics
CHM13
The complete sequence of a human genome
dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
Liftoff
An accurate GFF3/GTF lift over pipeline
BoWangXJTU's Repositories
BoWangXJTU/Liftoff
An accurate GFF3/GTF lift over pipeline
BoWangXJTU/3d-dna
3D de novo assembly (3D DNA) pipeline
BoWangXJTU/Bioinformatics-with-Python-Cookbook-Second-Edition
Bioinformatics with Python Cookbook Second Edition, published by Packt
BoWangXJTU/Chlamydomonas_comparative_genomics
BoWangXJTU/CHM13
The complete sequence of a human genome
BoWangXJTU/CMplot
📊 Circular and Rectangular Manhattan Plot
BoWangXJTU/Col-CEN
Resources for the Col-CEN reference genome assemblies
BoWangXJTU/datasets
Datasets generated by our lab.
BoWangXJTU/deep_learning_object_detection
A paper list of object detection using deep learning.
BoWangXJTU/DupGen_finder
A pipeline used to identify different modes of duplicated gene pairs
BoWangXJTU/esATAC
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
BoWangXJTU/flair
Full-Length Alternative Isoform analysis of RNA
BoWangXJTU/fp-growth
Python implementation of the Frequent Pattern Growth algorithm
BoWangXJTU/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
BoWangXJTU/HiCtrans
HiCtrans is a pipeline to call translocations from Hi-C data
BoWangXJTU/HORmon
BoWangXJTU/Juicebox
Visualization and analysis software for Hi-C data -
BoWangXJTU/MCscanX2Band
BoWangXJTU/methccs
Detecting DNA methylation from PacBio CCS reads
BoWangXJTU/mmdetection
OpenMMLab Detection Toolbox and Benchmark
BoWangXJTU/Multi_scale_evolution
Multi-scale evolution analysis of with aid of protein 3D structures for 332 different yeast species plus 11 fungal species.
BoWangXJTU/NextDenovo
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
BoWangXJTU/Phylo-HMRF
BoWangXJTU/polymorphology
Analyze genome-wide distributions of polymorphisms in relation to gene features
BoWangXJTU/PRINGO
Proteomic Information Navigated Genomic Outlook (PRINGO), which is a set of custom R scripts, is for visualisation of genomic features. PRINGO combines results from Secretome prediction pipeline (INRAE Nancy, France), genome stats, and other pipelines including Transposon Identification Nominative Genome Overview (TINGO; Morin et al. 2019).
BoWangXJTU/py
Repository to store sample python programs for python learning
BoWangXJTU/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
BoWangXJTU/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
BoWangXJTU/Scripts_for_GB
The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
BoWangXJTU/shasta
De novo assembly from Oxford Nanopore reads.