BoWangXJTU

BoWangXJTU's Stars

• ultralytics/ultralytics

  Ultralytics YOLO11 🚀

  Language:Python38.6k19010.7k7.5k

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k151882741

• jerryji1993/DNABERT

  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Language:Python64112115167

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python4641136048

• MAGICS-LAB/DNABERT_2

  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  Language:Shell3511013081

• marbl/MashMap

  A fast approximate aligner for long DNA sequences

  Language:C++280175239

• BIMSBbioinfo/janggu

  Deep learning infrastructure for genomics

  Language:Jupyter Notebook258193134

• wdecoster/chopper

  Language:Rust17873713

• lh3/yak

  Yet another k-mer analyzer

  Language:C1318249

• asl/BandageNG

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++1231010412

• marbl/HG002

  A complete diploid human genome

  1161295

• EichlerLab/pav

  Phased assembly variant caller

  Language:Python1108578

• human-pangenomics/HPP_Year1_Assemblies

  Assemblies from HPP Year 1 production

  741529

• yukiteruono/pbsim3

  PBSIM3: a simulator for all types of PacBio and ONT long reads

  Language:C++741346

• chfi/gfaestus

  GFA visualizer, GPU-accelerated using Vulkan

  Language:Rust709114

• Shuhua-Group/Chinese-Pangenome-Consortium-Phase-I

  Language:Shell662411

• maickrau/MBG

  Language:C++623262

• human-pangenomics/HPP_Year1_Data_Freeze_v1.0

  56754

• BGI-shenzhen/BamDeal

  BamDeal: a comprehensive toolkit for bam manipulation

  Language:C++534320

• mrvollger/NucFreq

  Language:Python35367

• JM-SONG/GenomeSyn

  Language:Python23004

• sakshar/rambler

  Language:Python9131

• T2T-CN1/CN1

  The complete sequence of a Chinese individual

  Language:Python8112

• banzhou59/GenomeSyn

  Language:Python7248

• kishwarshafin/T2T_polishing_scripts

  Scripts used for polishing T2T assembly

  Language:Python7410

• pgrady1322/T2T-Polish

  Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Arang Rhie

  Language:Shell5000

• gorliver/paf2delta

  convert paf to delta format

  Language:Perl2201

• logsdon-lab/NucFlag

  Misassembly Identifier

  Language:Python21130

• PyZhang-Bio/ANNEVO

  Deep learning-based gene annotation tool

  Language:Python2

• BoWangXJTU/T2T-CQ

  Telomere-to-telomere of ChineseQuartet (CQ)

  Language:R10