Pinned Repositories
450K_DataProcessing
Complete pipeline to process Illumina 450K methylation data.
DiverseScripts
gatk
Official code repository for GATK versions 4 and up
glimix-core
Fast inference for Generalised Linear Mixed Models.
GOsummaries
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
kraken
Kraken taxonomic sequence classification system
limix
Linear mixed model for genomic analyses.
limix_qtl
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
Bonder-MJ's Repositories
Bonder-MJ/450K_DataProcessing
Complete pipeline to process Illumina 450K methylation data.
Bonder-MJ/systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
Bonder-MJ/DiverseScripts
Bonder-MJ/gatk
Official code repository for GATK versions 4 and up
Bonder-MJ/glimix-core
Fast inference for Generalised Linear Mixed Models.
Bonder-MJ/GOsummaries
Bonder-MJ/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
Bonder-MJ/kraken
Kraken taxonomic sequence classification system
Bonder-MJ/limix
Linear mixed model for genomic analyses.
Bonder-MJ/limix_qtl
Bonder-MJ/limix_tools
Tools for working with the LIMIX linear mixed modelling package.
Bonder-MJ/MicrobiomeDDA
Diffferential distribution analysis of microbiome sequencing data
Bonder-MJ/molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
Bonder-MJ/Multi-Threaded-In-Place-QuickSort
Bonder-MJ/ParallelColt
Parallel Colt is a multithreaded version of Colt.
Bonder-MJ/picrust
Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests
Bonder-MJ/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests