MOLGENIS - open source solutions for scientific data

The Netherlands, Europe

Pinned Repositories

capice
Language:Python23 5 5310
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
Language:Perl20 13 39
molgenis
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Language:Java116 41 3.1k96
molgenis-emx2
MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
Language:Vue14 11 99518
molgenis-legacy
The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences
Language:Java20 21 3119
molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
Language:Shell28 28 3743
molgenis-service-armadillo
Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
Language:Java7 12 19710
NIPTeR
R Package for Non Invasive Prenatal Testing (NIPT) analysis
Language:R40 26 2116
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
Language:Java172 47 94100
vip
Variant Interpretation Pipeline
Language:Shell23 6 1306

MOLGENIS - open source solutions for scientific data's Repositories

molgenis/vip
Variant Interpretation Pipeline
Language:Shell23 6 1306
molgenis/molgenis-emx2
MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
Language:Vue14 11 99518
molgenis/vite-plugin-inline
Vite plugin that embeds .js and .css as base85 data
Language:TypeScript10 5 3
molgenis/molgenis-service-armadillo
Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
Language:Java7 12 19710
molgenis/PICALO
eQTL interaction optimization using expectation maximization
Language:Python5 4 13
molgenis/vip-inheritance-matcher
annotates VCF samples with denovo and possible compound flags and matching inheritance modes
Language:Java5 5 12
molgenis/NGS_Automated
Language:Shell4 14 198
molgenis/vip-report-template
Report template for Variant Call Format (VCF) Report generator
Language:TypeScript4 5 920
molgenis/GAP
Genotyping Array Pipeline
Language:Shell3 7 178
molgenis/molgenis-r-armadillo
Client to manage shared files in the MOLGENIS Armadillo suite from R
Language:R3 10 255
molgenis/vip-decision-tree
Decision tree module for the Variant Interpretation Pipeline (vip)
Language:Java3 5 12
molgenis/vip-report
Report generator for Variant Call Format (VCF) files
Language:HTML3 5 181
molgenis/asterix
Automated PGx pipeline
Language:R2 5 02
molgenis/ds-tidyverse
Language:R2 4 331
molgenis/vip-report-api
Report API for Variant Call Format (VCF) Report templates
Language:TypeScript2 5 9
molgenis/vip-report-vcf
TypeScript VCF library with support for both reading and writing
Language:TypeScript2 5 3
molgenis/capice-resources
Repository for resource files for CAPICE and updating CAPICE model
Language:Python1 3 21
molgenis/ds-tidyverse-client
Language:R11
molgenis/PGx-pipeline
Farmacogenetics pipeline
Language:Shell1 7 04
molgenis/sc-MetaBrain-consortium
Language:Python1 14 01
molgenis/vip-inheritance
Language:Java1 5 2
molgenis/molgenis.org
Source code of the (new) website for MOLGENIS
Language:CSS0 25 722
molgenis/aoc-2023
Language:Python7 01
molgenis/ds-admin-support
Consented admin update tool for DataSHIELD servers (Armadillo/Opal)
Language:Vue
molgenis/molgenis-app-eqtlgen
Frontend for eqtlgen paper
Language:HTML8 04
molgenis/projects-rd-dashboards
Language:Vue4 2
molgenis/projects-rd-recon4imd
Language:Python2
molgenis/take-it-easyconfigs
Language:Perl5 18
molgenis/vip-utils
Shared utils and resources for VIP modules and tools
Language:Java4 2
molgenis/vip-web
Variant Interpretation Pipeline web interface
Language:Java4 0