molgenis/systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
JavaGPL-3.0
Issues
- 3
Error during GADO prioritisation when it encounters an unexpected HPO term
#671 opened by souzadevinicius - 3
- 1
gene_network_decomposition.py
#669 opened by biopig - 6
How to select significant cell type eQTL
#668 opened by zhangpicb - 0
- 0
Not all variants are flipped
#666 opened by abedkurdi - 0
can't open eQTLGen now
#665 opened by LynnChan99 - 0
[Genotype-IO] Error parsing VCF info column value
#664 opened by Bonder-MJ - 0
- 6
Can't download jar for eQTL analyzer
#660 opened by BennyStrobes - 2
Decon-eQTL
#642 opened by TatiKarp - 1
difficults in using Genotype Harmonizer
#637 opened by malu-rdz - 2
- 0
- 1
tabix support for CSI index
#619 opened by ClayBirkett - 0
Increase the usage of compound assignment operators
#605 opened by elfring - 3
Downstreamer : java.lang.RuntimeException: java.lang.ArrayIndexOutOfBoundsException
#604 opened by nrosewick - 0
Dependencies issues Downstreamer
#603 opened by nrosewick - 1
Chromosome X
#601 opened by DanielEWeeks - 7
GADO profiles update
#586 opened by edg1983 - 0
can not open this list
#598 opened by lizhebio - 3
Decon-eQTL dosage and snpsToTest
#595 opened by cindywen96 - 1
Decon-eQTL - dosage file missing values
#589 opened by mooreann - 1
Strand alignment error
#587 opened by ConnieXuhm - 1
Decon-eQTL: Expression file needing snp?
#579 opened by mooreann - 1
decon-eQTL genotype file
#577 opened by mooreann - 1
INFO - Variants where not sorted, loading will be faster if the data is pre-sorted
#578 opened by onebeingmay - 1
Eosinophils
#554 opened by antgomo - 0
Multipart genotype files
#568 opened by Bonder-MJ - 0
VCF Probability fall back from phased to unphased
#569 opened by Bonder-MJ - 1
Clarifying the license?
#562 opened by tomsing1 - 3
Error on Example Run
#518 opened by ONeillMB1 - 0
- 3
- 1
- 3
- 2
Genotype Harmonizer --hweFilter minimum p-value?
#489 opened by juliedwhite - 0
Writing on multi allelic SNPs
#485 opened by Bonder-MJ - 0
Missing values ImputedDosageMatrix.dat
#481 opened by harmbrugge - 2
Output to Bed Issues
#480 opened by albeele1 - 2
Genotype Harmonizer an option to drop A/T C/G altogether
#475 opened by gaow - 0
Fix Genotype-IO/pom.xml dependency issues
#479 opened by dennishendriksen - 3
Link to PLINK website in eQTL manual is broken
#474 opened by npklein - 1
GenotypeHarmonizer installation issue?
#473 opened by anderseng - 6
- 1
input file request for genotype harmonizer
#467 opened by sarahcn - 16
- 0
Coverage reporting no longer works
#445 opened by fdlk - 3
Subproject versions have diverged
#447 opened by fdlk - 2
Link to JAR dead
#443 opened by colindaven