Pinned Repositories
cnv-gene-mapping
Develop methods that leverage copy number variations (CNVs) for gene mapping
fine-mapping
Genetic fine-mapping pipelines using tools from Chicago
ipynb-html-encrypted
Convert ipynb to encrypted HTML file for sharing with private parties
ismb-2018
VAT tutorial for ISMB 2018
LDblocks_GRCh38
misc
mnmashr
Multivariate, multiple regression extension of ASH
neuro-twas
Development code (private repo) for TWAS related multiomic gene-mapping in Alzheimer's disease data
SEQLinkage
Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data
SEQPower
Power Analysis and Sample Size Estimation Software for Sequence Based Association Studies
gaow's Repositories
gaow/SEQLinkage
Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data
gaow/neuro-twas
Development code (private repo) for TWAS related multiomic gene-mapping in Alzheimer's disease data
gaow/fine-mapping
Genetic fine-mapping pipelines using tools from Chicago
gaow/misc
gaow/cnv-gene-mapping
Develop methods that leverage copy number variations (CNVs) for gene mapping
gaow/LDblocks_GRCh38
gaow/mvarbvs
Multivariate Bayesian variable selection via variational inference
gaow/reading
A repo for reading notes
gaow/rotation-2023
Rotation projects for first year MS research assistants
gaow/susieR
R package for "sum of single effects" regression.
gaow/beamer
markdown->beamer templates for pandoc
gaow/bioworkflows
In-house computational biology workflows at Columbia Neurology
gaow/computational-genomics-r
gaow/DENTIST
DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
gaow/dotfiles
Forked from Daniel Nachun's dotfile repo
gaow/FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
gaow/flashier
A faster and angrier package for EBMF. In progress.
gaow/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
gaow/jupyterlab-sos-feedstock
A conda-smithy repository for jupyterlab-sos.
gaow/labnotes
A tool that I built and use to manage pieces of notes since 2011
gaow/pandoc-chs
Markdown编辑中文LaTeX文档
gaow/plink2R
Read PLINK BED/BIM/FAM files into R
gaow/pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
gaow/R01-AD-2022-codes
Source codes to reproduce prelim results for my R01 on Alzheimer's disease study in 2022
gaow/recipe_staging
Staging repository to build and upload conda packages before their submission to conda-forge and bioconda
gaow/sos
SoS workflow system for daily data analysis
gaow/statistical-genetics-resources
Resources (software, data, research article) in the field of statistical genetics
gaow/susie-notes
gaow/temp
gaow/xqtl-pipeline
Molecular QTL data analysis pipeline developed for ADSP functional genomic xQTL consortium