Error on Example Run

Question

Error on Example Run

ONeillMB1 opened this issue 6 years ago · 3 comments

I am following the ReadMe. When I run
dCell.exp <- dCell.expProcessing(count.table, trim = TRUE)
I get the following error: Error in calcNormFactors(D) : could not find function "calcNormFactors"

I see that the edgeR package has a calcNormFactors function, but loading that package does not solve the problem.

Answer 1 · 2018-11-29T12:43:07.000Z

@ONeillMB1 Can you paste the code that you ran? After I do library(edgeR) and then run the code from the README it works for me.

Answer 2 · 2018-11-29T14:17:11.000Z

@ONeillMB1 Also, can you run sessionInfo() before and after running library(DeconCell) and post the results here?

Answer 3 · 2018-11-30T09:26:14.000Z

@npklein - I had to restart my R session this morning, and when I run it now it is working! There must have been some other package interfering or something?!