MOLGENIS - open source solutions for scientific data

The Netherlands, Europe

Pinned Repositories

capice
Language:Python24 4 5310
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
Language:Perl22 12 39
CoNVaDING
Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data
Language:HTML21 18 2222
molgenis
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Language:Java117 39 3.1k96
molgenis-emx2
MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
Language:Vue16 10 1.1k21
molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
Language:Shell28 28 3743
molgenis-service-armadillo
Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite
Language:Java7 10 20410
NIPTeR
R Package for Non Invasive Prenatal Testing (NIPT) analysis
Language:R41 26 2116
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
Language:Java172 46 95100
vip
Variant Interpretation Pipeline
Language:Shell24 6 1356

MOLGENIS - open source solutions for scientific data's Repositories

molgenis/molgenis
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Language:Java117 39 3.1k96
molgenis/scRNA-seq
Language:HTML18 14 45
molgenis/NGS_DNA
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Language:Shell16 23 4517
molgenis/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
Language:Python4 12 013
molgenis/molgenis-app-biobank-explorer
Vue application for the biobank explorer; A card detail view on BBMRI biobank - collection data
Language:JavaScript3 20 8220
molgenis/AGCT
Array Genotyping Conversion Tool
Language:Shell1 6 15
molgenis/gdi-localportal
GDI implementation of Local portal: a Molgenis connected to REMS, with Keycloak and Postgres
Language:Shell1 5 01
molgenis/molgenis-ops-galaxy
Ansible Galaxy public files
Language:JavaScript1 7 95
molgenis/molgenis-py-client
A Python client for the MOLGENIS REST API
Language:Python1 13 129
molgenis/molgenis-py-cohorts-etl
Python lib containing scripts to control data flow from staging env to live catalogue
Language:Python0 14 00
molgenis/projects-rd-cosas
Language:Python00
molgenis/RD-Registry
RD registry with Molgenis
Language:Shell0 3 00
molgenis/RD3_database
01
molgenis/spatial_fat
spatial FAT study, using spatial transcriptomics on fat tissue
Language:R0 2 00
molgenis/data-transform-vkgl
Language:Java13 333
molgenis/depad-utils
Utilities for deploy admins
Language:R6 14
molgenis/fair-schemas
FAIR schemas to enable and encourage data interoperability across systems
Language:Java4 01
molgenis/GAP-QC
Language:R5 02
molgenis/molgenis-app-capice
Language:Java8 21
molgenis/molgenis-app-eucan-connect
This is the user interface for Eucan Connect. Here you can find studies/cohorts within multiple catalogues.
Language:JavaScript12 0
molgenis/molgenis-app-lifelines-webshop
App to explore and create data order for lifelines biobank
Language:TypeScript11 686
molgenis/molgenis-app-vibe
Language:Java5 31
molgenis/molgenis-py-bbmri-eric
MOLGENIS Python tooling for BBMRI-ERIC
Language:Python11 103
molgenis/molgenis-py-consensus
Language:Python13 83
molgenis/molgenis-py-eucan-connect
MOLGENIS Python tooling for the EUCAN-Connect Catalogue
Language:Python6 01
molgenis/NGS_Demultiplexing
Language:Shell6
molgenis/rd-datamodel
The rare diseases data model for Molgenis
Language:Python5 51
molgenis/Trendanalysis
Generate Trendanalysis plots for standard diagnostic techniques.
Language:Shell5 03
molgenis/vip-report-app
Variant Interpretation Pipeline report application
molgenis/vip2rdf
Converts (part of) a VIP vcf file to a RDF Turtle file
Language:Java