BonilKoo
Ph.D. candidate in bioinformatics at Seoul National University. Interested in integration of artificial intelligence, multi-omics, drug discovery.
Seoul National UniversitySeoul, Republic of Korea
Pinned Repositories
DRPreter
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
GOODHSE
[CVPR 2024] Improving out-of-distribution generalization in graphs via hierarchical semantic environments
KEGG-kgml-parser
Python code to download and parse KEGG pathway kgml file
metheor
Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
ML_purity
neticspy
Python implementation of NetICS (Network-based Integration of Multi-omics data).
patient_stratification
Patient stratification for simultaneous learning of molecular subtype and survival outcome using genetic algorithm-based gene set selection
SSM
Supervised Subgraph Mining for Chemical Graphs
XMtagger
Python code for adding XM tag to bisulfite bam file.
metheor
:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
BonilKoo's Repositories
BonilKoo/ML_purity
BonilKoo/KEGG-kgml-parser
Python code to download and parse KEGG pathway kgml file
BonilKoo/DRPreter
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
BonilKoo/GOODHSE
[CVPR 2024] Improving out-of-distribution generalization in graphs via hierarchical semantic environments
BonilKoo/metheor
Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
BonilKoo/neticspy
Python implementation of NetICS (Network-based Integration of Multi-omics data).
BonilKoo/patient_stratification
Patient stratification for simultaneous learning of molecular subtype and survival outcome using genetic algorithm-based gene set selection
BonilKoo/SSM
Supervised Subgraph Mining for Chemical Graphs
BonilKoo/XMtagger
Python code for adding XM tag to bisulfite bam file.