This repository contains the code for releasing proteinshake datasets. It also computes the random, sequence, and structure splits.
To release, install proteinshake, foldseek, and cd-hit:
- https://github.com/BorgwardtLab/proteinshake
- https://github.com/steineggerlab/foldseek
- https://github.com/weizhongli/cdhit
Adjust the TAG, SCRATCH, DESTINATION, NJOBS variables in release.py according to your system.
Then run: python release.py
Note that this repository is licensed under GPLv3, due to dependency licenses.