BrunoGrandePhD
Senior Software Engineer. Advocate for open and reproducible science. Certified Carpentries and RStudio Tidyverse trainer. Nature and wildlife photographer.
@Sage-BionetworksSeattle, WA
Pinned Repositories
cancer_api
A Python framework and API for handling and storing cancer genomics data and metadata.
guild
Build a lab website in minutes to showcase your research!
nf-prov
Provenance plugin for Nextflow
nf-prov
nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
nf-dcqc
Nextflow Workflow for Data Coordination Quality Control
nf-vcf2maf
Annotate VCF files using VEP and generate MAF files using vcf2maf
py-dcqc
Python package for performing quality control (QC) for data coordination (DC)
py-orca
Python package for connecting services and building data pipelines
BrunoGrandePhD's Repositories
BrunoGrandePhD/nf-prov
Provenance plugin for Nextflow
BrunoGrandePhD/cancer_api
A Python framework and API for handling and storing cancer genomics data and metadata.
BrunoGrandePhD/2020-11-14-rladies-workshop
Tidying Up Messy Data: Hands-on Demos
BrunoGrandePhD/rrr
Reproducible Research in R
BrunoGrandePhD/advent-2022
BrunoGrandePhD/aind-codeocean-api
Python wrapper around Code Ocean's REST API
BrunoGrandePhD/aws-genomics-workflows
Genomics Workflows on AWS
BrunoGrandePhD/aws-infra
Global Sage Bionetworks AWS Infrastructure
BrunoGrandePhD/BrunoGrandePhD
BrunoGrandePhD/cfn-cr-sc-product-provider
BrunoGrandePhD/containers
BrunoGrandePhD/cwltool
Common Workflow Language reference implementation
BrunoGrandePhD/data_curator
Data Ingest Shiny App
BrunoGrandePhD/dockstore-tool-calculate_driver_results
BrunoGrandePhD/github-action
BrunoGrandePhD/HTAN-Data-Ingress-Docs
A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.
BrunoGrandePhD/minidream-challenge
BrunoGrandePhD/nf-co.re
Code and files for the main nf-core website.
BrunoGrandePhD/nfportalutils
Convenience functions for NF Portal metadata.
BrunoGrandePhD/organizations-infra
Sage AWS Organizations
BrunoGrandePhD/packer-amazonlinux-docker
An Amazon Linux AMI with docker
BrunoGrandePhD/playground
BrunoGrandePhD/porTools
This package helps maintain content in Sage portals.
BrunoGrandePhD/s3-synapse-sync
BrunoGrandePhD/sage-sandbox
A place to experiment for all things Sage!
BrunoGrandePhD/sandbox-provisioner
An service to auto provision resources
BrunoGrandePhD/scicomp-provisioner
An service to auto provision resources
BrunoGrandePhD/service-catalog-library
Library of service catalog templates
BrunoGrandePhD/synapsePythonClient
Programmatic interface to Synapse services for Python
BrunoGrandePhD/tomorrow-scraper
A lightweight system for scraping the Tomorrow.io API for weather forecasts and recent history