BrunoGrandePhD
Senior Software Engineer. Advocate for open and reproducible science. Certified Carpentries and RStudio Tidyverse trainer. Nature and wildlife photographer.
@Sage-BionetworksSeattle, WA
Pinned Repositories
cancer_api
A Python framework and API for handling and storing cancer genomics data and metadata.
guild
Build a lab website in minutes to showcase your research!
nf-prov
Provenance plugin for Nextflow
nf-prov
nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
nf-dcqc
Nextflow Workflow for Data Coordination Quality Control
nf-vcf2maf
Annotate VCF files using VEP and generate MAF files using vcf2maf
py-dcqc
Python package for performing quality control (QC) for data coordination (DC)
py-orca
Python package for connecting services and building data pipelines
BrunoGrandePhD's Repositories
BrunoGrandePhD/lesson-github-pages
An introductory lesson for setting up a personal website blog using GitHub Pages
BrunoGrandePhD/autoIGV
This program can take a tab-delimited text file containing bam file paths and loci and create a subdirectory of image captures for you.
BrunoGrandePhD/bioscripts
An agglomeration of scripts I wrote to help me handle, edit and generally deal with various bioinformatic tasks.
BrunoGrandePhD/experiments
A miscellany of random experiments
BrunoGrandePhD/rosalind
Solutions to problems on rosalind.info