C3BI-pasteur-fr

Center of Bioinformatics, Biostatistics and Integrative Biology

Institut Pasteur 25-28 rue du Dr Roux 75015 Paris

Pinned Repositories

BeadArrayCNV
Language:Shell1 13 00
Cassandre
Personal database system integrating a "user-friendly" interface to manage and explore multiple sets of large-scale experimental results.
Language:JavaScript2 5 11
Galaxy-playbook
Language:Python2 12 00
igv-webapp
IGV Web App
Language:JavaScript1 2 00
ngphylogeny-django
Language:HTML28 13 323
ngphylogeny-galaxy
Galaxy tools and workflows used in NGPhylogeny.fr
Language:HTML4 13 13
ReGaTE
Registration of Galaxy Tools in Elixir
Language:Python12 12 84
SCHNAPPsContributions
some contributions to the scShinyHub project
Language:R6 3 00
toppred
toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the 'Positive Inside' (PMID: 1593632)
Language:C4 5 02
UTechSCB-SCHNAPPs
Shiny app for the analysis of single cell data
Language:R25 17 42

C3BI-pasteur-fr's Repositories

C3BI-pasteur-fr/ngphylogeny-django
Language:HTML28 13 323
C3BI-pasteur-fr/UTechSCB-SCHNAPPs
Shiny app for the analysis of single cell data
Language:R25 17 42
C3BI-pasteur-fr/ReGaTE
Registration of Galaxy Tools in Elixir
Language:Python12 12 84
C3BI-pasteur-fr/SCHNAPPsContributions
some contributions to the scShinyHub project
Language:R6 3 00
C3BI-pasteur-fr/ngphylogeny-galaxy
Galaxy tools and workflows used in NGPhylogeny.fr
Language:HTML4 13 13
C3BI-pasteur-fr/BeadArrayCNV
Language:Shell1 13 00
C3BI-pasteur-fr/CoreGeneBuilder
CoreGeneBuilder can be used to extract a core genome or a persistent genome from a given set of bacterial genomes
Language:Shell1 13 10
C3BI-pasteur-fr/eFASTA
eFASTA: extracting nucleotide segments from FASTA file
Language:Java1 12 00
C3BI-pasteur-fr/igv-webapp
IGV Web App
Language:JavaScript1 2 00
C3BI-pasteur-fr/IFB-BioShadock
host Dockerfiles for Bioshadock
0 12 00
C3BI-pasteur-fr/IFB-playbook
store playbook to build IFB appliances
Language:Shell0 9 01
C3BI-pasteur-fr/common-workflow-language
Repository for CWL Specfications
Language:Python12 0
C3BI-pasteur-fr/craw
Counter RNA seq Window (CRAW) compute and visualize the coverage of RNA seq experiment.
12 0
C3BI-pasteur-fr/cwltool
Common Workflow Language reference implementation
Language:Python11 0
C3BI-pasteur-fr/FragmentAnalyser
Language:Jupyter Notebook9 14
C3BI-pasteur-fr/galaxy
Data intensive science for everyone.
Language:Python11 0
C3BI-pasteur-fr/galaxy_base_conf
IPGalaxy basic configuration
Language:Python12 0
C3BI-pasteur-fr/Galaxy_training_material
Language:HTML11 0
C3BI-pasteur-fr/python-course-1
python course of E2I2B
Language:Python5 0
C3BI-pasteur-fr/python-solutions-1
solutions of the E2I2B python courses exercises
Language:Python4 0
C3BI-pasteur-fr/Salmonella-CRISPR-Typing
Language:Python12 02
C3BI-pasteur-fr/taxo_pack
Analyze and visualize the taxonomic abundance of set of sequences
Language:Python10 01
C3BI-pasteur-fr/taxo_rrna
Creation of taxonomy Berleley DB for Silva and Greengenes 16S databases
Language:Python11 02
C3BI-pasteur-fr/taxodb_ncbi
NCBI Taxonomy Database formater
Language:Python11 12
C3BI-pasteur-fr/Tempora
Pathway-based trajectory inference method for time-series scRNAseq data
Language:R2 0
C3BI-pasteur-fr/TemporaFork
Language:R13 0
C3BI-pasteur-fr/test
test
Language:Python5 0
C3BI-pasteur-fr/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
Language:Python12 0
C3BI-pasteur-fr/training-material
A collection of training material from offered Galaxy courses
Language:HTML11 0
C3BI-pasteur-fr/workflows
Community maintained workflows & tools (with examples)
Language:Common Workflow Language12 0