CDCgov/seqsender

Issues

• [FEATURE REQUEST] Add NCBI databases TSA and WGS

  #91 opened a month ago by dthoward96
  0

• [FEATURE REQUEST] Adding Pathoplexus to the options

  #88 opened a month ago by peterwc-cdc
  0

• Add support for new GISAID EpiFlu fields

  #80 opened a month ago by nbx0
  1

• Add docs to readme and doc site about container location and availability

  #74 opened 2 months ago by leebrian
  0

• V1.2.1 Update

  #67 opened 2 months ago by dthoward96
  0

• Shiny app template errors

  #65 opened 2 months ago by erikwolfsohn
  1

• Issue templates to update

  #35 opened 2 months ago by dthoward96
  1

• can't check status

  #48 opened 3 months ago by SeanSierra-Patev
  1

• User defined date specificity

  #46 opened 3 months ago by mikeyweigand
  2

• automatic biosample package validation

  #43 opened 3 months ago by dthoward96
  0

• Functions to add to next version

  #14 opened 3 months ago by dthoward96
  2

• Create Automated Test/Validation Scripts

  #15 opened a year ago by dthoward96
  0

• Pandera metadata validation

  #36 opened 7 months ago by dthoward96
  1

• There is no submission directory at /home/user1/FLU_reporting

  #47 opened 7 months ago by SeanSierra-Patev
  1

• xml submissions to NCBI do not require 'org_id'

  #40 opened 8 months ago by mikeyweigand
  1

• Use Flu Submission Org

  #5 opened 8 months ago by leebrian
  4

• NCBI & GISAID account creation docs

  #9 opened 8 months ago by nbx0
  7

• Update readme with doc style info

  #6 opened 9 months ago by leebrian
  15

• Clarify GISAID CLI usage

  #3 opened 9 months ago by nbx0
  2

• Step by step docs with screenshots

  #13 opened 9 months ago by nbx0
  0

• Can someone documenthow to obtain NCBI username and password

  #16 opened 10 months ago by whitney
  5

• Add Influenza submission

  #4 opened a year ago by nbx0
  8

• Default to GISAID sub first and attach EPI_SEQUENCE_ID to GenBank

  #12 opened a year ago by nbx0
  1

• How to correctly add Source Modifiers for genbank submisson?

  #8 opened a year ago by ammaraziz
  1

• FTP error: [Errno 2] No such file or directory: '/test_input/test_fastq_R1.fastq'

  #1 opened a year ago by DOH-KEW4303
  3

• Errors in script for production submission

  #2 opened a year ago by DOH-KEW4303
  2