ncbi-sra
There are 17 repositories under ncbi-sra topic.
saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
louiejtaylor/grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
urmi-21/pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
yangwu91/r2g
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
CDCgov/seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
avsastry/modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
stajichlab/biosample_metadata
Extract metadata from biosamples in NCBI
maurya-anand/ARA
ARA.v1.6.0
enviro-lab/ncbi-submit
A tool to prepare files and run/monitor programmatic submissions to NCBI
tracywong117/NCBI-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
yodeng/srautils
fast utils for fetch and dump NCBI SRA archive raw data
Nicholas-Lewis-USDA/NCBI-Biosample-builder
Pulls Metadata from NCBI based on Sample name or SRR #
yangwu91/r2g.docker
The Docker integration for the r2g project.
almeidasilvaf/plant_transcriptomes
Data and code used in the Plant Genomes dashboard
IBCHgenomic/sra-explorer
explore sra databases and sequence retrieval
maurya-anand/sra-annotator
A command-line tool for retrieving annotations from the NCBI SRA.
wrf/taxonomy_database
frequency of high level ranks in sequence databases