Add more picard options to MarkDuplicatesWrapper
Opened this issue · 0 comments
owlang commented
Add support for more of the Picard options to the GUI wrapper for MarkDuplicates with the following defaults:
- ASSSUME_SORTED='true'
- DUPLICATE_SCORING_STRATEGY='SUM_OF_BASE_QUALITIES'
- READ_NAME_REGEX='[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*.'
- OPTICAL_DUPLICATE_PIXEL_DISTANCE='100'
- VALIDATION_STRINGENCY='LENIENT'
- QUIET=true
- VERBOSITY=ERROR