CEGRcode/scriptmanager

TagPileup GUI tag extend - 2bp by default - should be 1bp

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owlang commented

TagPileup default marks 1bp for each encoding and tag extend is how many additional marks should be appended in the direction of the read. Therefore, the default value should be 0 (1 mark + 0 additional marks) but right now it is 1. Functionally, this results in a tally of 2bp long marks (1 mark + 1 additional mark).

Add GUI dialog pop-up for negative tag extend values redirecting the user to use the shift bp feature.

Note: The TagExtend CLI option has already been added with a default value of 0 on dev so just the GUI needs to be adjusted to default to 1.